View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_low_7 (Length: 399)
Name: NF4015_low_7
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 23222421 - 23222774
Alignment:
| Q |
1 |
aacgtcaatggagtggaatgatttagtaatagtaatgcataaatttagaaagaaaataaaaataatgaaataaactattcaagaactgattgaacaatga |
100 |
Q |
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| T |
23222421 |
aacgttaatggagtggaatgaattagtaatagtaatgcataaatttagaaagaaaataaaaataatgaaataaactattcaagaactgattgaacaatga |
23222520 |
T |
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| Q |
101 |
tgggctcataagttatactaaattatctttgtaaactcacatatacatatatggatgcaaggtcacttacgtgctttacgattccagaagtgccttgctg |
200 |
Q |
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| T |
23222521 |
tgggctcataagttatactaaattatctttgtaaactcacatatacatatatggatgcaaggtcacttacgtgctttacgattccagaagtgccttgctg |
23222620 |
T |
|
| Q |
201 |
ttgccaattttattgaaaagagaagcataaatagcaaagatagattcaagataacctttttaaaataagccatctttaaccaaaaattgtagaagctaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23222621 |
ttgccaattttattgaaaagagaagcataaatagcaaagatagattcaagataacctttttaaaataagccatctttaaccaaaaattgtagaagctaga |
23222720 |
T |
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| Q |
301 |
gcatatattcgtgaagtgtgtccggaatggatgtaaatatatatagatctagct |
354 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |||||| |
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| T |
23222721 |
gcatatattcgtgaagtgtgtttggaatggatggaaatatatatagacctagct |
23222774 |
T |
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