View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_low_8 (Length: 391)
Name: NF4015_low_8
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 33337071 - 33337449
Alignment:
| Q |
1 |
acatcggaagacaattttgggagtatgatccgaatcttggaactgaacaagaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgctc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33337071 |
acattggaagacaattttgggagtatgatccgaatcttggaactgaacaaaaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgctt |
33337170 |
T |
|
| Q |
101 |
caaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattataatttacatatagtgctgaagggtaaataaataatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
33337171 |
caaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattata----acatataatgctgaagggtaaat-aataatta |
33337265 |
T |
|
| Q |
201 |
attttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcagagaataata--ataaggtgaaaatggagaaggaagaagtgggaaagac |
298 |
Q |
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| T |
33337266 |
attttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcagagaataataatataaggtgaaaatggagaaggaagaagtgggaaagac |
33337365 |
T |
|
| Q |
299 |
actaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttgcttct |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
33337366 |
actaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgattatggtggtcctttgtttct |
33337449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 35131060 - 35130896
Alignment:
| Q |
1 |
acatcggaagacaattttgggagtatgatccgaatcttggaactgaacaagaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgctc |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
35131060 |
acattggaagacaattttgggagtatgatccgaatcttggaaatgaacaagaacgagctcaagtggaacatgctcgcaaacaatttcatgtcaatcgctt |
35130961 |
T |
|
| Q |
101 |
caaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattataa |
165 |
Q |
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| T |
35130960 |
caaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattataa |
35130896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 280 - 382
Target Start/End: Complemental strand, 35130702 - 35130600
Alignment:
| Q |
280 |
aggaagaagtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttgct |
379 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
35130702 |
aggaaaaagtgggaaagacactaaaaagagcattgagatgttactcaacattgcaaactgaggatggtttctggcctggtgactatggtggtcctttgtt |
35130603 |
T |
|
| Q |
380 |
tct |
382 |
Q |
| |
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||| |
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|
| T |
35130602 |
tct |
35130600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 35130819 - 35130718
Alignment:
| Q |
190 |
ataaataattaattttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcag---agaataataataaggtgaaaatggagaaggaaga |
286 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35130819 |
ataaatacttaattttggttttgtagtttgaaagggaaaaaggtgttttaaatatgaaatcagagaagaataataataaggtgaaaatggagaaggaaga |
35130720 |
T |
|
| Q |
287 |
ag |
288 |
Q |
| |
|
|| |
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|
| T |
35130719 |
ag |
35130718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 22501914 - 22502056
Alignment:
| Q |
1 |
acatcggaagacaattttgggagtatgatccgaatcttggaactgaacaagaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgctc |
100 |
Q |
| |
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|||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |
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| T |
22501914 |
acattggaagacagttttgggagttcgatccacatcttggaactgaacaagaacgagctcaagtagaacaagctcgcaaacaatttaatcaaaatcgctt |
22502013 |
T |
|
| Q |
101 |
caaaactaagaacagttctgatctcttaatgagactccaggta |
143 |
Q |
| |
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||| | ||| |||||||||||||||||||||||| | |||||| |
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| T |
22502014 |
caacaataaaaacagttctgatctcttaatgagattacaggta |
22502056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 370
Target Start/End: Original strand, 22502355 - 22502438
Alignment:
| Q |
287 |
agtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtgg |
370 |
Q |
| |
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|||| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
22502355 |
agtgagaaggacactaaaaagagcactgagaaattactcaacactgcaggttgaagatggtttctggccgggtgactatggtgg |
22502438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 22502226 - 22502266
Alignment:
| Q |
194 |
ataattaattttggttttgtagtttgagagggaaaaaggtt |
234 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||| |
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| T |
22502226 |
ataaataattttggttttgcagtttgagagggaaaaaggtt |
22502266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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