View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4015_low_9 (Length: 391)
Name: NF4015_low_9
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 152 - 372
Target Start/End: Complemental strand, 50454342 - 50454122
Alignment:
| Q |
152 |
aagttgtcaacaaattcatctttttgtatttttcggcattccgatgttcctattaccaatgcaaatatcacaactagtactccaacatacttgtgtaaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454342 |
aagttgtcaacaaattcatctttttgtatttttcggcattccgatgttcctatcaccaatgcaaatatcacaactagtactccaacatacttgtgtaaat |
50454243 |
T |
|
| Q |
252 |
ttcccatcttaatttgcacaaattaaaacagaaaattgtaatagagctggaaaaacttgatttgctcttgtaatgagaatgcttggcaattggagttcta |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454242 |
ttcccatcttaatttgcacaaattaaaacagaaaattgtaatagagctggaaaaacttgatttgctcttgtaatgagaatgcttggcaattggagttcta |
50454143 |
T |
|
| Q |
352 |
tttataagagcacatgccatt |
372 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
50454142 |
tttataggagcacatgccatt |
50454122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 300
Target Start/End: Complemental strand, 1184279 - 1184138
Alignment:
| Q |
159 |
caacaaattcatctttttgtatttttcggcattccgatgttcctattaccaatgcaaatatcacaactagtactccaacatacttgtgtaaatttcccat |
258 |
Q |
| |
|
|||| ||||||| || || ||| ||| ||||||| ||||||||||| | ||| || |||| |||| |||||| |||||||| || |||||||| |||| |
|
|
| T |
1184279 |
caactaattcattttcttttatgttttggcattcagatgttcctatcaataataaaattatcgcaacaagtactgcaacatacctgagtaaattttccat |
1184180 |
T |
|
| Q |
259 |
cttaatttgcacaaattaaaacagaaaattgtaatagagctg |
300 |
Q |
| |
|
| ||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
1184179 |
ttaaatttgcacaaattaggacagaaaatagtaatagagctg |
1184138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University