View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_high_1 (Length: 578)
Name: NF4016_high_1
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 6685068 - 6684675
Alignment:
| Q |
18 |
gttagcatgattacaagttagcgatgtgcgttttggaaatgtgattggcataaattacttttccagcatcacattttccaaattgcgttacaaaatcatg |
117 |
Q |
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| T |
6685068 |
gttagcaggattacaagttagcgatgtgcgttttggaaatgtgatttgcataaattatttttccaacatcgcattttccaaattgcgttacaaaatcatg |
6684969 |
T |
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| Q |
118 |
ttttcataaaagcattctggaataagtcaatctcgaagtgtttcannnnnnnagctttccattcattcaattgcaattgagaaagcatgggcaacagaag |
217 |
Q |
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| T |
6684968 |
ttttcataaacgcattctggaataagtcaatctcgaagtgtttcattttgctagctttccattcattcagttgcaattgagaaagcatgg-caacagaag |
6684870 |
T |
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| Q |
218 |
gagaattcgagcagatattgatagctaaaataaattctagattcattcatgtttagaatcgcatttgcaaaatcacttttgtagatttgtgttcgaaaat |
317 |
Q |
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| T |
6684869 |
gagaattcgagcagatattgatagcgaaaataaattctagattcattcatgtttggaatcgcatttgcagaatcacttttgtagatttgtgttccaaaat |
6684770 |
T |
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| Q |
318 |
cattagtctcagtttgctgttagcaatgtggtagaatcacgttttgtttttgttcttccttgcaaaaacacgttttggagaagtaattgtaattt |
412 |
Q |
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| T |
6684769 |
catcagtctcagtttgctgttagcaatgtggtagaatcaggttttgtttttgatcttccttgcagaatcacgttttggagaagtaattgtaattt |
6684675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 409 - 566
Target Start/End: Complemental strand, 6684624 - 6684467
Alignment:
| Q |
409 |
atttcgggaagaagaaaaaagtgcgtttagtgttctcacgtgtttctcatctcagattttcaacattgctcacagttggacttgaccttcatttggagag |
508 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6684624 |
atttcgggaagaagaaaaaagcgtgttttgtgttctcacgtgtttctcatctcagattttcaacattgctcacagttggacttgaccttcatttggagag |
6684525 |
T |
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| Q |
509 |
caaaagttgggcttgtgttgcagaattttgttttactcagtctaccccatttttcctt |
566 |
Q |
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| T |
6684524 |
caaaagttgggcttgtgttgcagaattttgttttactcagtctaccccatttttcctt |
6684467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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