View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4016_high_13 (Length: 338)
Name: NF4016_high_13
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 1346348 - 1346525
Alignment:
| Q |
17 |
agttattgaattatcttttccaaacacttccagcaattgatagctctaaatcatatacaagatttacaagacttagagccagaaaatatataaagaatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1346348 |
agttattgaattatcttttccaaacacttccagcaattgatagctctaaatcatatacaagatttacaagacttagagcaagaaaatatataaagaatct |
1346447 |
T |
|
| Q |
117 |
gcaactgaaaacacattgcagaaacatgaaaaagctaacaaatagaccaaattatcaaaaatgaactcaattttattg |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1346448 |
gcaactgaaagcacattgcagaaacatgaaaaagctaacaaatagaccaaattatcaaaaatgaactcaattttattg |
1346525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 1346511 - 1346616
Alignment:
| Q |
233 |
aactcaattttattgacctctgtctaggcataaaactgattgcaccaaacttacaaatccaaatcaaaatcaacaacacagtaaagaacaaaagctaatt |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1346511 |
aactcaattttattgacctctgtctaggcataaaactgattgcaccaaacttacaaatccaaatcaaaatcaacaacacagaaaagaacaaaagctaatt |
1346610 |
T |
|
| Q |
333 |
gcaagt |
338 |
Q |
| |
|
|||||| |
|
|
| T |
1346611 |
gcaagt |
1346616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University