View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_high_14 (Length: 334)

Name: NF4016_high_14
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_high_14
NF4016_high_14
[»] chr8 (9 HSPs)
chr8 (7-269)||(6289762-6290024)
chr8 (63-198)||(6322262-6322397)
chr8 (72-177)||(6332855-6332960)
chr8 (63-197)||(6275395-6275529)
chr8 (63-185)||(6424912-6425034)
chr8 (63-190)||(6364034-6364161)
chr8 (73-191)||(7460146-7460264)
chr8 (63-153)||(6353238-6353328)
chr8 (73-151)||(7471722-7471800)
[»] chr2 (1 HSPs)
chr2 (99-186)||(42694074-42694161)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 6289762 - 6290024
Alignment:
Q  7 acatcatcaaatgtatcaaactctggcttataattgcattctatttctatctcagatatgaaatcttgagatgctgatttcagtaggttatcaagaaaat 106  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6289762 acatcattaaaggtatcaaactctggcttataattgcattctatttctatctcagatatgaaatcttgagatgctgatttcagtaggttatcaagaaatt 6289861  T
Q  107 ctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttccgactctcacttttaggatctgttcacatacaaaatagcaaact 206  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||      
T  6289862 ctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaacaaagccgttccgactctcacttttaggatctgttcatgtacaaaatagcaaata 6289961  T
Q  207 tctattagctagaagaatgactttagaatcattttcaacccaaaaaataatgccatcattatt 269  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  6289962 tgtattagctagaagaatgactttagaatcattttcaacacaaaaaataatgccagcattatt 6290024  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 6322262 - 6322397
Alignment:
Q  63 tatgaaatcttgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttc 162  Q
    |||||||  |||||| |||||||| |||| || | |||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||| ||| |    
T  6322262 tatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcc 6322361  T
Q  163 cgactctcacttttaggatctgttcacatacaaaat 198  Q
    || |||||||||||||||||||||||||||||||||    
T  6322362 cgtctctcacttttaggatctgttcacatacaaaat 6322397  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 6332855 - 6332960
Alignment:
Q  72 ttgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttccgactctca 171  Q
    ||||||||||||||||||||  | | ||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||| || |||||||||||    
T  6332855 ttgagatgctgatttcagtatataaacaagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaacaaagtcgctccgactctca 6332954  T
Q  172 ctttta 177  Q
    ||||||    
T  6332955 ctttta 6332960  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 6275395 - 6275529
Alignment:
Q  63 tatgaaatcttgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttc 162  Q
    ||||| || ||||||| ||||||| |||| || | |||||||||||||||||||| ||||| |||||||||||||||||||||  |||| | |  || ||    
T  6275395 tatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctc 6275494  T
Q  163 cgactctcacttttaggatctgttcacatacaaaa 197  Q
    || |||||||||||||||||||  || ||||||||    
T  6275495 cgtctctcacttttaggatctgcacaaatacaaaa 6275529  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 6424912 - 6425034
Alignment:
Q  63 tatgaaatcttgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttc 162  Q
    ||||| || ||||||||||||||| |||| |  | ||||||| ||||||||||| | |||  ||||||  ||||||||||||| |||||||  |||| ||    
T  6424912 tatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctcttggaaggtaaacagtgccgctc 6425011  T
Q  163 cgactctcacttttaggatctgt 185  Q
    ||||||||||| |||||||||||    
T  6425012 cgactctcactcttaggatctgt 6425034  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 6364034 - 6364161
Alignment:
Q  63 tatgaaatcttgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttc 162  Q
    ||||| || ||||||||| ||||| |||| || | ||||||| ||||| ||||| | |||  ||||||||||||||||||| | |||||||  | |  |     
T  6364034 tatgacattttgagatgcagatttgagtatgtgaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaacagtgtcactt 6364133  T
Q  163 cgactctcacttttaggatctgttcaca 190  Q
    ||||||||||| ||||||||||||||||    
T  6364134 cgactctcactcttaggatctgttcaca 6364161  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 7460146 - 7460264
Alignment:
Q  73 tgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttccgactctcac 172  Q
    |||| ||||||||| ||||  | | ||||||| || || |||||| ||||| ||||||||||||||||||||| ||||| |  | |  | ||||||||||    
T  7460146 tgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaatagcgtcacttcgactctcac 7460245  T
Q  173 ttttaggatctgttcacat 191  Q
    | |||||||||||||||||    
T  7460246 tcttaggatctgttcacat 7460264  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 6353238 - 6353328
Alignment:
Q  63 tatgaaatcttgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaaca 153  Q
    ||||| || ||||||||||||||| |||| || | ||||||| ||||| ||||| | |||  |||| |||||||||||||||| |||||||    
T  6353238 tatgacattttgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaaca 6353328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 7471722 - 7471800
Alignment:
Q  73 tgagatgctgatttcagtaggttatcaagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaa 151  Q
    |||| ||||||||| ||||  | | ||||||| || || |||||| ||||| ||||||||||||||||||||| |||||    
T  7471722 tgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaa 7471800  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 42694074 - 42694161
Alignment:
Q  99 aagaaaatctgaagacttcgagtgatcaaatgattcatctcttggaatgtaaacaaagccgttccgactctcacttttaggatctgtt 186  Q
    |||||||||||| || ||| ||||| |||| | ||||||||||||||  || |||||  |  ||| ||||||||||||||||||||||    
T  42694074 aagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaagatacacaaaatcactcctactctcacttttaggatctgtt 42694161  T

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