View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_high_20 (Length: 270)

Name: NF4016_high_20
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_high_20
NF4016_high_20
[»] chr4 (2 HSPs)
chr4 (135-253)||(38754127-38754243)
chr4 (37-133)||(41805147-41805244)
[»] chr8 (1 HSPs)
chr8 (36-74)||(43691993-43692031)
[»] chr1 (1 HSPs)
chr1 (35-118)||(52282259-52282343)
[»] chr7 (1 HSPs)
chr7 (39-89)||(38178067-38178117)
[»] chr2 (1 HSPs)
chr2 (35-97)||(35567957-35568019)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 38754243 - 38754127
Alignment:
Q  135 attgaacgtgacattgaatattaatacactttgaaatgannnnnnncaaataaaaagtagtaatagagataagatagggatagacttgtggtataagcca 234  Q
    |||| |||||||||||||||||||||||||| |||||||       ||| |||||||||   || ||||||||||| |||||||||||||||||||||||    
T  38754243 attgcacgtgacattgaatattaatacacttagaaatgatttttttcaattaaaaagta---atggagataagataaggatagacttgtggtataagcca 38754147  T
Q  235 aatta-tttatgatgtgcgt 253  Q
    ||||| ||||||||||||||    
T  38754146 aattattttatgatgtgcgt 38754127  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 41805147 - 41805244
Alignment:
Q  37 gggaaaattacactaacctcccctaaagtttctttaaacatcacataaacc-cctctagttttttaataaacactaacctcccctaagttctattaaa 133  Q
    |||||||||||||  |||||||| || || |||||||| | |||| | ||| ||||||||||| ||||| |||  ||||||||||||| ||| |||||    
T  41805147 gggaaaattacacagacctcccccaaggtctctttaaataacacaaacacctcctctagttttataatagacataaacctcccctaagatcttttaaa 41805244  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 43691993 - 43692031
Alignment:
Q  36 agggaaaattacactaacctcccctaaagtttctttaaa 74  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  43691993 agggaaaattacactaacctcccctaaagtttatttaaa 43692031  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 52282259 - 52282343
Alignment:
Q  35 aagggaaaattacactaacctcccctaaagtttctttaaacatcacata-aacccctctagttttttaataaacactaacctccc 118  Q
    |||||||||||||||||||||||||| | |||| || ||||| |||| | | || |||||||||| ||||| ||| |||||||||    
T  52282259 aagggaaaattacactaacctcccctgaggtttgttcaaacaacacaaacatcctctctagttttataatagacattaacctccc 52282343  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 38178067 - 38178117
Alignment:
Q  39 gaaaattacactaacctcccctaaagtttctttaaacatcacataaacccc 89  Q
    |||||||||||||||||||||| | ||||  ||||||| ||||||||||||    
T  38178067 gaaaattacactaacctcccctcaggttttcttaaacaacacataaacccc 38178117  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 35568019 - 35567957
Alignment:
Q  35 aagggaaaattacactaacctcccctaaagtttctttaaacatcacataaacccctctagttt 97  Q
    ||||| |||||||||| ||| |||||   ||||||||||||| |||||| |||||||||||||    
T  35568019 aagggcaaattacactcaccacccctcgggtttctttaaacaacacatagacccctctagttt 35567957  T

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