View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_high_25 (Length: 249)
Name: NF4016_high_25
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_25 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18079833 - 18079587
Alignment:
| Q |
1 |
aagcagaataacaattatgtaagtaatccaaaagaaataagaagnnnnnnnntggagccatgaagcatgggcaaagcaacacacattaataaaaccatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18079833 |
aagcagaataacaattatgtaagtaatccaaaagaaataagaagaaaaaaaatggagccatgaagcatgggcaaagcaacacacattaataaaacgatag |
18079734 |
T |
|
| Q |
101 |
agaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttc |
197 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079733 |
agaaaaaagcaagaagaaatggacagcaagaagtgagacatttggacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttc |
18079634 |
T |
|
| Q |
198 |
atccgatcatcttaaatatggaagaagtctttcagcatattcttgga |
244 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
18079633 |
atccaatcgtcttaaatatggaagaagtctttcagcatatacttgga |
18079587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 51480189 - 51479945
Alignment:
| Q |
1 |
aagcagaataacaattatgtaagtaatccaaaagaaataagaagnnnnnnnntggagccatgaagcatgggcaaagcaacacacattaataaaaccatag |
100 |
Q |
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|||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51480189 |
aagcaggatatcaattatgtaagtaatccaaaagaaagaagaagaaaaaa---ggagccatgaagcatgggcaaagcaacacacattaataaaaggatag |
51480093 |
T |
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| Q |
101 |
agaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttc |
197 |
Q |
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||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
51480092 |
agaaaaaagcaagaagaaatggacagcaagaaatgagacttttggacgaaaaagtaccttgtctctttgcttctatctccttctcgaccatttgttcttc |
51479993 |
T |
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| Q |
198 |
atccgatcatcttaaatatggaagaag-tctttcagcatattcttgga |
244 |
Q |
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|||| ||| |||||||||||||||||| ||||||| ||||| |||||| |
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| T |
51479992 |
atccaatcgtcttaaatatggaagaagttctttcaccatatacttgga |
51479945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 30207205 - 30207376
Alignment:
| Q |
58 |
ccatgaagcatgggcaaagcaacacacattaataaaaccataga--gaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagt |
152 |
Q |
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|||||||||||| | || ||||| | ||||||||||| ||||| |||||||||||||| ||| | |||||||||||||| || || |||||| | |
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| T |
30207205 |
ccatgaagcatgagaaacgcaactcgcattaataaaaggatagatagaaaaaagcaagaagaaatgaattgcaagaagtgagactcttggaggaaaaa-t |
30207303 |
T |
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| Q |
153 |
acattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt |
225 |
Q |
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|| ||||||||||||| |||| ||||||||| ||||||||||||||||| || ||||||||| ||||||||| |
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| T |
30207304 |
accttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaagaagt |
30207376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 51497118 - 51496991
Alignment:
| Q |
111 |
aagaaatggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatctt |
210 |
Q |
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|||||||||| ||||||||| |||| ||| || ||||| ||| |||| |||||||| |||| |||||||| ||||||| ||||||||| | | ||| |
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| T |
51497118 |
aagaaatggattgcaagaagtaagacttttggaggaaaatataccttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgactt |
51497019 |
T |
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| Q |
211 |
aaatatggaagaagt-ctttcagcatat |
237 |
Q |
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|||||||||| |||| |||||||||||| |
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| T |
51497018 |
aaatatggaaaaagtactttcagcatat |
51496991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 137941 - 138041
Alignment:
| Q |
145 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaa-gtctttcagcatattcttgg |
243 |
Q |
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|||||| ||| |||| |||| ||| |||| |||||||| ||||||||||| ||| || ||||||||||||||||| || ||||||||||| ||||| |
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| T |
137941 |
gaaaaaataccttgtatcttggcttctatctccttctcagccatttgttctagatctaattctcttaaatatggaagaaggtatttcagcatatacttgg |
138040 |
T |
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| Q |
244 |
a |
244 |
Q |
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| T |
138041 |
a |
138041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 27396064 - 27395964
Alignment:
| Q |
145 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatattcttgg |
243 |
Q |
| |
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|||||| ||| |||| ||| ||| |||| ||||||||| |||||||||||| |||| ||| | |||||| ||||||||| |||| ||||||| ||||| |
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| T |
27396064 |
gaaaaaataccttgtaacttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttgg |
27395965 |
T |
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| Q |
244 |
a |
244 |
Q |
| |
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| T |
27395964 |
a |
27395964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 43160432 - 43160376
Alignment:
| Q |
186 |
catttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatattctt |
241 |
Q |
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|||||||||||||||| | | |||||||| |||||||||| ||||||| |||||||| |
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| T |
43160432 |
catttgttcttcatccaaccctcttaaatgtggaagaagtcctttcagaatattctt |
43160376 |
T |
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