View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_high_27 (Length: 246)
Name: NF4016_high_27
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 26792045 - 26792256
Alignment:
| Q |
14 |
cacagagatcaattcatggtcttcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaa |
113 |
Q |
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| T |
26792045 |
cacaaagatcaattcatggtcttcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaa |
26792144 |
T |
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| Q |
114 |
acgtgccgaaattgcaaggtaagccacttgaatggttgnnnnnnngtggaaattattatttttgaagagtaatgaattatgtatcacaaacacttatgag |
213 |
Q |
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| T |
26792145 |
acgtgccgaaattgcaaggtaagccacttgaatggttgaaaaaaagtggaaattatta---ttgaagagtaatgaattatgtatcacaaacacttatgag |
26792241 |
T |
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| Q |
214 |
tgaaagtgtcgtatc |
228 |
Q |
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| T |
26792242 |
tgaaagtgtcgtatc |
26792256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 1464347 - 1464470
Alignment:
| Q |
28 |
catggtcttcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattg |
127 |
Q |
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| T |
1464347 |
catggtcttcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatgg |
1464446 |
T |
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| Q |
128 |
caaggtaagccacttgaatggttg |
151 |
Q |
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| T |
1464447 |
caaggtaagccaattgaatggttg |
1464470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 1491728 - 1491858
Alignment:
| Q |
20 |
gatcaattcatggtcttcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgc |
119 |
Q |
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| T |
1491728 |
gatcacttcatggtcttcaaccttttacctcaaaccttttcaatgaaaatagtagctatagggagctttcagagattgcagagcaagacaagaaacatgc |
1491827 |
T |
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| Q |
120 |
cgaaattgcaaggtaagccacttgaatggtt |
150 |
Q |
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| T |
1491828 |
tgaagttgcaagttaatccatttaaatggtt |
1491858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 1490535 - 1490394
Alignment:
| Q |
9 |
agcagcacagagatcaattcatggtcttcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagcc |
108 |
Q |
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| T |
1490535 |
agcagcacagggatcacttcatggtgttcagccttttacctcgaaccttttgaatgaaaatagtagctaaagggagctttcagagattgtagagcaagac |
1490436 |
T |
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| Q |
109 |
aggaaacgtgccgaaattgcaaggtaagccacttgaatggtt |
150 |
Q |
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| T |
1490435 |
aagaaacacgttgtagttgcaaggtaagccatttgaatggtt |
1490394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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