View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_high_28 (Length: 238)
Name: NF4016_high_28
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 21778605 - 21778515
Alignment:
| Q |
117 |
ggtgggtgagcacattacgttcgtataatatatagtatgtgtttactataagtgaaatatatctatcatttactcaaaaaagaagtgaaat |
207 |
Q |
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| T |
21778605 |
ggtgggtgagcacattacgttcgtataatatatagtatgtgtttactataagtgaaatatatctatcatttactcaaaaaataagtgaaat |
21778515 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 21778680 - 21778643
Alignment:
| Q |
18 |
ttagaaatgcaatatgggcaaaaactgggttccaataa |
55 |
Q |
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| T |
21778680 |
ttagaaatgcaatatgggcaaaaactgggttccaataa |
21778643 |
T |
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