View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_high_6 (Length: 420)
Name: NF4016_high_6
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 80 - 411
Target Start/End: Original strand, 11111098 - 11111429
Alignment:
| Q |
80 |
tgattacaaacactttctcgtaaaacagttatgttgccacgtctttaaatatgttctccttaactaaactacttcaacttcaggtgctcatacatttggg |
179 |
Q |
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| T |
11111098 |
tgattacaaacactttctcgtaaaacagttatgttgccacgtctttaaatatgatctccttaactaaactacttcaacttcaggtgctcatacatttggg |
11111197 |
T |
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| Q |
180 |
agagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactcttgataaaacatacttacaacaattgcgaa |
279 |
Q |
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| T |
11111198 |
agagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactcttgatacaacatacttacaacagttgcgaa |
11111297 |
T |
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| Q |
280 |
accaatgccctcagaatggaactggaaataaccgtgtcaatttcgacccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaa |
379 |
Q |
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| T |
11111298 |
accaatgccctcagaatggaactggaaataaccgtgttaatttcgacccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaa |
11111397 |
T |
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| Q |
380 |
aaagggtttgcttcaaagtgaccaagaattat |
411 |
Q |
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| T |
11111398 |
aaagggtttgcttcaaagtgaccaagaattat |
11111429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 160 - 409
Target Start/End: Complemental strand, 10793616 - 10793367
Alignment:
| Q |
160 |
caggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactcttgataaaac |
259 |
Q |
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| T |
10793616 |
caggtgcacacacatttgggagagcacgttgttctttattcgttgatcgattatacaacttcagcaatactggcgaacctgatccaactcttgatacaac |
10793517 |
T |
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| Q |
260 |
atacttacaacaattgcgaaaccaatgccctcagaatggaactggaaataaccgtgtcaatttcgacccaacgactcctgatacattggacaagaacttc |
359 |
Q |
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| T |
10793516 |
gtacttaaaacaattgcaaaacgaatgtcctcaaaatggacctggaaataaccgtgtaaatttcgacccaactactcctgatacattggacaagaacttc |
10793417 |
T |
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| Q |
360 |
tacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaatt |
409 |
Q |
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| T |
10793416 |
tacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaatt |
10793367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 152 - 409
Target Start/End: Original strand, 11118941 - 11119198
Alignment:
| Q |
152 |
ttcaacttcaggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactctt |
251 |
Q |
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| T |
11118941 |
ttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgacaatactggcaaacctgatccaactctt |
11119040 |
T |
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| Q |
252 |
gataaaacatacttacaacaattgcgaaaccaatgccctcagaatggaactggaaataaccgtgtcaatttcgacccaacgactcctgatacattggaca |
351 |
Q |
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| T |
11119041 |
gacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaattttgatccaacaactcccgataaattcgaca |
11119140 |
T |
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| Q |
352 |
agaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaatt |
409 |
Q |
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| T |
11119141 |
agaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaatt |
11119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 406
Target Start/End: Original strand, 11137489 - 11137734
Alignment:
| Q |
161 |
aggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactcttgataaaaca |
260 |
Q |
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| T |
11137489 |
aggtgctcatacattcggaagagcacgttgcactttcatcactgatcgattatacaacttcagcagtacaggaaaacctgatccaactcttaatacaact |
11137588 |
T |
|
| Q |
261 |
tacttacaacaattgcgaaaccaatgccctcagaatggaactggaaataaccgtgtcaatttcgacccaacgactcctgatacattggacaagaacttct |
360 |
Q |
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|| |||||| |||| || || ||| ||| | |||| | |||||||| | |||||| ||||||||||||||||||| ||| |||||||||| || |
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| T |
11137589 |
tatttacaagaattacgtaaaatatgtcctaatggtggaccaccaaataacctcgccaattttgacccaacgactcctgataaatttgacaagaactact |
11137688 |
T |
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| Q |
361 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaaga |
406 |
Q |
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| T |
11137689 |
actccaatcttcagggtaaaaagggtttgcttcagagtgaccaaga |
11137734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 11149919 - 11150008
Alignment:
| Q |
317 |
caatttcgacccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaaga |
406 |
Q |
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| T |
11149919 |
caatttcgatccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaaga |
11150008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 11156587 - 11156676
Alignment:
| Q |
317 |
caatttcgacccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaaga |
406 |
Q |
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| T |
11156587 |
caatttcgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaaga |
11156676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 11172711 - 11172759
Alignment:
| Q |
202 |
ttgatcgattatacaacttcaacaatactggcaaacccgatccaactct |
250 |
Q |
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| T |
11172711 |
ttgatcgattatacaatttcagcaatactggaaatcccgatccaactct |
11172759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 11145960 - 11146039
Alignment:
| Q |
327 |
ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaaga |
406 |
Q |
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| T |
11145960 |
ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaaga |
11146039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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