View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_high_7 (Length: 415)
Name: NF4016_high_7
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 25014722 - 25015081
Alignment:
| Q |
16 |
atgaactcgcaaaaggaaagcagggatctcgcaaatctgatcagaaaaggaaagggacacaacacaatcaatcggaacaagaaatagaagaacagatgac |
115 |
Q |
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| T |
25014722 |
atgaactcgcaaaaggaaagcagggatctcgcaaatccgatcagaaaaggaaagggacacaacacaatcaatcggaacaagaaataaaagaacataggac |
25014821 |
T |
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| Q |
116 |
acacaaaagtaaacaatcagattgattcaataatcaacggcatcgaggaacaaacactcacaagatcagcacttagtcaaaggacaaacagacgggaacc |
215 |
Q |
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| T |
25014822 |
atacaaaagtaaacgatcagattgattcaataatcaacggcatcgagggacaaacactcacaagatcaacacttagtcaaaggacaaacagacgggaacc |
25014921 |
T |
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| Q |
216 |
caggagagaaaaaagattgtccactacaggatttattttgattaaagtattctttttaattgatgaaagaatagtaaaaggattgattcctaatcttctc |
315 |
Q |
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| T |
25014922 |
caggagagaaaaaagattgtccactgcaggatttatttcgattaaagtattctttttaattgataaaagaatagtaaaaggattgattcctaatcttctc |
25015021 |
T |
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| Q |
316 |
attttctttcaacagnnnnnnncttggaagaaaataaaatattcttgtgtctctgtcatc |
375 |
Q |
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| T |
25015022 |
attttctttcaacagttattttcttggaagaaaataaaatattcttgtgtctctatcatc |
25015081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 19116131 - 19116229
Alignment:
| Q |
126 |
aaacaatcagattgattcaataatcaacggcatcgaggaacaaacactcacaagatcagcacttagtcaaaggacaaacagacgggaacccaggagaga |
224 |
Q |
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| T |
19116131 |
aaacgatcagattgattcaacaatcaaccgcatcgaggaacaagcactcacaaggtcaacgtttagtcaaaggacaatcagacggaaacccaggagaga |
19116229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 43230708 - 43230640
Alignment:
| Q |
260 |
aagtattctttttaattgatgaaagaatagtaaaaggattgattcctaatcttctcattttctttcaaca |
329 |
Q |
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| T |
43230708 |
aagttttcattttgatttatgaaagaatagtaaatg-attaattcctaatcttctcattttctttcaaca |
43230640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 43230621 - 43230561
Alignment:
| Q |
341 |
ggaagaaaataaaatattcttgtgtctctgtcatccattttcaagagaagaggtaattaat |
401 |
Q |
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| T |
43230621 |
ggaagaaaataacatactattgcgtctccatcatccattttcaagagaagaggtaattaat |
43230561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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