View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_high_8 (Length: 415)

Name: NF4016_high_8
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_high_8
NF4016_high_8
[»] chr2 (1 HSPs)
chr2 (1-398)||(20039466-20039862)
[»] chr1 (1 HSPs)
chr1 (33-189)||(41134130-41134284)
[»] chr5 (2 HSPs)
chr5 (89-167)||(39087021-39087099)
chr5 (1-59)||(39087088-39087146)
[»] chr3 (1 HSPs)
chr3 (25-91)||(40820035-40820100)
[»] scaffold0136 (1 HSPs)
scaffold0136 (16-80)||(21771-21834)
[»] chr8 (1 HSPs)
chr8 (33-85)||(35885780-35885832)
[»] chr4 (1 HSPs)
chr4 (33-85)||(24472275-24472327)
[»] chr6 (1 HSPs)
chr6 (16-91)||(3336970-3337044)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 20039862 - 20039466
Alignment:
Q  1 gaatgagttcatatgttcagtttcatcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaacaagaggtt 100  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20039862 gaatgagttcatatgttctgtttaatcatttatttttaataaatttcaaacaagaggt-atatgtatctttgaaagtgaaactacgagaaacaagaggtt 20039764  T
Q  101 tcaacaagcaagtttttgcactgatttcgctttattcatgggttgttggaattgaatgttgatttttcctttgatttttattatgatttatggaggatgc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20039763 tcaacaagcaagtttttgcactgatttcgctttattcatgagttgttggaattgaatgttgatttttcctttgatttttattatgatttatggaggatgc 20039664  T
Q  201 taaattattaaatttgggtaaacccatgagttatcctttgctagctggtttggccaaattattcagttgagaaattaagaaccttacctcctttcagttg 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  20039663 taaattattaaatttgggtaaacccatgagttattctttgctagctggtttggccaaatttttcagttgagaaattaagaaccttacctcatctcagttg 20039564  T
Q  301 agacatattgacctttttgttgtttcttgtgataagtaggacactcagacatgagatgaccatatccatcacagccaaaacactgtaaacctctccct 398  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  20039563 agacatattgacctttttattgtttcttgagataagtaggacactcggagttgagatgaccatatccatcacagccaaaacattgtaaacctctccct 20039466  T

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Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 41134284 - 41134130
Alignment:
Q  33 tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaacaagaggtttcaacaagcaagtttttgcactgatttcgctt 132  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||||||| ||||    
T  41134284 tttttaatgaatttcaaacaagaggttatctgtgtctttgaaagtgaaactacaagaaacaaga-gtttcaacaa--aagtttttgcactgattttgctt 41134188  T
Q  133 t-attcatgggttgttggaattgaatgttgatttttcctttgatttttattatgattt 189  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  41134187 tgattcatgggttgctggaattgaatgttgatttttcctttgatttttatcatgattt 41134130  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 39087099 - 39087021
Alignment:
Q  89 aaacaagaggtttcaacaagcaagtttttgcactgatttcgcttt-attcatgggttgttggaattgaatgttgattttt 167  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||| |||||||||||||||||||||    
T  39087099 aaacaagaggtttcaacaagcaagtatttgcagtgatttcgttttgattcatgggttg-tggaattgaatgttgattttt 39087021  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39087146 - 39087088
Alignment:
Q  1 gaatgagttcatatgttcagtttcatcatttctttttaataaatttcaaacaagaggtt 59  Q
    ||||| |||||||||||  |||| ||||||  |||||||||||||||||||||||||||    
T  39087146 gaatgggttcatatgtttggtttaatcattcatttttaataaatttcaaacaagaggtt 39087088  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 40820100 - 40820035
Alignment:
Q  25 atcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaa 91  Q
    |||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| ||||||||||    
T  40820100 atcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaagctacgagaaa 40820035  T

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Target: scaffold0136 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 21834 - 21771
Alignment:
Q  16 ttcagtttcatcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaa 80  Q
    |||||||| |||||| ||||||||| |||||||||||| |||| || ||||||||||||||||||    
T  21834 ttcagtttaatcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaa 21771  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 35885832 - 35885780
Alignment:
Q  33 tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactac 85  Q
    |||||||| |||||||||||||||||||| || |||||| |||||||||||||    
T  35885832 tttttaattaatttcaaacaagaggttatgtgcatctttaaaagtgaaactac 35885780  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 24472327 - 24472275
Alignment:
Q  33 tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactac 85  Q
    |||||||| |||||||||||||||||||| || |||||| |||||||||||||    
T  24472327 tttttaattaatttcaaacaagaggttatgtgcatctttaaaagtgaaactac 24472275  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 3336970 - 3337044
Alignment:
Q  16 ttcagtttcatcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaa 91  Q
    |||| ||| |||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| |||| |||||    
T  3336970 ttcaatttaatcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaagctacaagaaa 3337044  T

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