View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_high_9 (Length: 376)

Name: NF4016_high_9
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_high_9
NF4016_high_9
[»] chr2 (11 HSPs)
chr2 (240-360)||(22988266-22988386)
chr2 (240-360)||(37778567-37778687)
chr2 (93-140)||(22988119-22988166)
chr2 (93-140)||(3246571-3246618)
chr2 (93-140)||(29460014-29460061)
chr2 (93-140)||(37778787-37778834)
chr2 (93-140)||(40652852-40652899)
chr2 (96-140)||(22989436-22989480)
chr2 (96-140)||(37903535-37903579)
chr2 (98-140)||(26319260-26319302)
chr2 (52-80)||(22988079-22988107)
[»] chr8 (4 HSPs)
chr8 (240-360)||(32208677-32208797)
chr8 (93-140)||(32208897-32208944)
chr8 (106-140)||(28842167-28842201)
chr8 (52-80)||(32208959-32208987)
[»] chr6 (1 HSPs)
chr6 (93-140)||(8642071-8642118)
[»] chr3 (3 HSPs)
chr3 (93-140)||(3740629-3740676)
chr3 (96-140)||(43267372-43267416)
chr3 (107-140)||(3743948-3743981)
[»] chr4 (2 HSPs)
chr4 (240-360)||(34738251-34738367)
chr4 (93-140)||(34738105-34738152)
[»] scaffold0061 (2 HSPs)
scaffold0061 (240-360)||(50299-50417)
scaffold0061 (93-140)||(50516-50563)
[»] scaffold0017 (2 HSPs)
scaffold0017 (240-360)||(148217-148335)
scaffold0017 (93-140)||(148071-148118)
[»] chr7 (1 HSPs)
chr7 (96-140)||(39072760-39072804)
[»] chr1 (1 HSPs)
chr1 (93-140)||(39622188-39622236)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 22988266 - 22988386
Alignment:
Q  240 atatatacataggagcttcgtagaaaatttgtctaacgaactatgaatgcaannnnnnnnataggcaagaagtggatagagtaggaataaataattttgg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||    
T  22988266 atatatacataggagcttcgtagaaaatttgtctaacgaactatgaatgcaattttttttataggcaagaagtcgatagagtaggaataaataattttgg 22988365  T
Q  340 aatgtaaccataagcatatat 360  Q
    |||||||||||||||||||||    
T  22988366 aatgtaaccataagcatatat 22988386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 37778687 - 37778567
Alignment:
Q  240 atatatacataggagcttcgtagaaaatttgtctaacgaactatgaatgcaannnnnnnnataggcaagaagtggatagagtaggaataaataattttgg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||||||||||||||||||||||    
T  37778687 atatatacataggagcttcgtagaaaatttgtctaacgaactatgaatgcaattttttttataggcaaaaagtggatagagtaggaataaataattttgg 37778588  T
Q  340 aatgtaaccataagcatatat 360  Q
    |||||||||||||||||||||    
T  37778587 aatgtaaccataagcatatat 37778567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 22988119 - 22988166
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22988119 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 22988166  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 3246618 - 3246571
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3246618 ctctcctttttccaaaaccctacaaagaaaggatatccattagataac 3246571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 29460061 - 29460014
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29460061 ctctcctttttccaaaaccctacaaagaaaggatatccattagataac 29460014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 37778834 - 37778787
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  37778834 ctctcctttctccaaaactctacaaagaaaggatatccattagataac 37778787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 40652852 - 40652899
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40652852 ctctcctttttccaaaaccctacaaagaaaggatatccattagataac 40652899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 22989436 - 22989480
Alignment:
Q  96 tcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  22989436 tcctttttcgaaaaccctacaaagaaaggatatccattagataac 22989480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 37903535 - 37903579
Alignment:
Q  96 tcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  37903535 tcctttttcgaaaaccctacaaagaaaggatatccattagataac 37903579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 26319302 - 26319260
Alignment:
Q  98 ctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||||||||||| |||||||||||||  ||||||||||    
T  26319302 ctttctccaaaaccctaaaaagaaaggatatttattagataac 26319260  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 22988079 - 22988107
Alignment:
Q  52 ccaccttttcacataagaagtgccatttc 80  Q
    |||||||||||||||||||||||||||||    
T  22988079 ccaccttttcacataagaagtgccatttc 22988107  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 32208797 - 32208677
Alignment:
Q  240 atatatacataggagcttcgtagaaaatttgtctaacgaactatgaatgcaannnnnnnnataggcaagaagtggatagagtaggaataaataattttgg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| || ||||||||||||||||||||||||||||    
T  32208797 atatatacataggagcttcgtagaaaatttgtctaacgaactatgaatgcaattttttttataggcaaaaaatggatagagtaggaataaataattttgg 32208698  T
Q  340 aatgtaaccataagcatatat 360  Q
    |||||||||| ||||||||||    
T  32208697 aatgtaaccagaagcatatat 32208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 32208944 - 32208897
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  32208944 ctctcatttctccaaaatcctacaaagaaaggatatccattagataac 32208897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 28842201 - 28842167
Alignment:
Q  106 aaaaccctacaaagaaaggatatccattagataac 140  Q
    |||||||||||||||||||||||||||||||||||    
T  28842201 aaaaccctacaaagaaaggatatccattagataac 28842167  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 32208987 - 32208959
Alignment:
Q  52 ccaccttttcacataagaagtgccatttc 80  Q
    |||||||||||||||||||||||||||||    
T  32208987 ccaccttttcacataagaagtgccatttc 32208959  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 8642071 - 8642118
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8642071 ctctcctttttccaaaaccctacaaagaaaggatatccattagataac 8642118  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 3740629 - 3740676
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3740629 ctctcctttttccaaaaccctacaaagaaaggatatccattagataac 3740676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 43267372 - 43267416
Alignment:
Q  96 tcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  43267372 tcctttttcgaaaaccctacaaagaaaggatatccattagataac 43267416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 3743948 - 3743981
Alignment:
Q  107 aaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||||||||||||||||||||||||||||    
T  3743948 aaaccctacaaagaaaggatatccattagataac 3743981  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 34738251 - 34738367
Alignment:
Q  240 atatatacataggagcttcgtagaaaatttgtctaacgaac--tatgaatgcaannnnnnnnataggcaagaagtggatagagtaggaataaataatttt 337  Q
    ||||||||||||||||||||||||||||||||||||  |||  |||||||||||        |||| ||| ||||||||||||||||    |||||||||    
T  34738251 atatatacataggagcttcgtagaaaatttgtctaataaactatatgaatgcaa--ttttttatagacaaaaagtggatagagtagg----aataatttt 34738344  T
Q  338 ggaatgtaaccataagcatatat 360  Q
    | |||| ||||||||||||||||    
T  34738345 gaaatgcaaccataagcatatat 34738367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 34738105 - 34738152
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  34738105 ctctcctttttccaaaatcctataaagaaaggatatccattagataac 34738152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 50417 - 50299
Alignment:
Q  240 atatatacataggagcttcgtagaaaatttgtctaacgaac--tatgaatgcaannnnnnnnataggcaagaagtggatagagtaggaataaataatttt 337  Q
    |||||||||||||||||||||||||||||| |||||  |||  |||||||||||        |||| ||| |||||||||||||| |    |||||||||    
T  50417 atatatacataggagcttcgtagaaaatttctctaataaactatatgaatgcaaatttttttatagacaaaaagtggatagagtaag----aataatttt 50322  T
Q  338 ggaatgtaaccataagcatatat 360  Q
    | |||| ||||||||||||||||    
T  50321 gaaatgcaaccataagcatatat 50299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 50563 - 50516
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  50563 ctctcatttatccaaaaccttacaaagaaaggatatccattagataac 50516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 148217 - 148335
Alignment:
Q  240 atatatacataggagcttcgtagaaaatttgtctaacgaac--tatgaatgcaannnnnnnnataggcaagaagtggatagagtaggaataaataatttt 337  Q
    |||||||||||||||||||||||||||||| |||||  |||  |||||||||||        |||| ||| |||||||||||||| |    |||||||||    
T  148217 atatatacataggagcttcgtagaaaatttctctaataaactatatgaatgcaaatttttttatagacaaaaagtggatagagtaag----aataatttt 148312  T
Q  338 ggaatgtaaccataagcatatat 360  Q
    | |||| ||||||||||||||||    
T  148313 gaaatgcaaccataagcatatat 148335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 148071 - 148118
Alignment:
Q  93 ctctcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  148071 ctctcatttatccaaaaccttacaaagaaaggatatccattagataac 148118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 39072760 - 39072804
Alignment:
Q  96 tcctttctccaaaaccctacaaagaaaggatatccattagataac 140  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  39072760 tcctttttcgaaaaccctacaaagaaaggatatccattagataac 39072804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 39622236 - 39622188
Alignment:
Q  93 ctctcctttctccaaaaccctacaaa-gaaaggatatccattagataac 140  Q
    |||| |||| || ||||||||||||| ||||||||||||||||||||||    
T  39622236 ctctgctttttcgaaaaccctacaaacgaaaggatatccattagataac 39622188  T

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