View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_11 (Length: 355)
Name: NF4016_low_11
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 46266584 - 46266262
Alignment:
| Q |
18 |
tgaagaacgaggatggtgcttctgtctgtagttattatcaatgaggggaagagtcacgtggttattatatatgctatgtaacactgacatctcagattga |
117 |
Q |
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| T |
46266584 |
tgaagaacgaggatggtgcttctgtctgtagttattattaatgaggggaagagtcacgtggttattatatattctatgtaacactgacatctcaaattga |
46266485 |
T |
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| Q |
118 |
aggtgtgtccggtgtctgacacatgttagtgtcggccaatgtgattatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46266484 |
aggtgtgtccggtgtctgacacatgttagtgtcggccaatgtgattatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgctt |
46266385 |
T |
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| Q |
218 |
catatgttatgtgtctattttgcagggaaataatggtggtccccctcctaatccccaatctggaccaccagagcatcagaattctcgtggttccaacaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46266384 |
catatgttatgtgtctattttgcagggaaataatggtggtccccctcctaatccccaatctggaccaccagagcatcagaattctcgtggttccaacaac |
46266285 |
T |
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| Q |
318 |
aatgcggtaattcttttcctttg |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
46266284 |
aatgcggtaattcttttcctttg |
46266262 |
T |
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