View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_12 (Length: 348)
Name: NF4016_low_12
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 31057514 - 31057832
Alignment:
| Q |
13 |
aatatcaaagtaatataaataaaccaaaaagagaaaatgtatcgagcctcagatttaattatgtgtacattttgggcactacatacatgaaccgtcggcc |
112 |
Q |
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| T |
31057514 |
aatatcaaagtaatataactaaaccaaaaagagaaaatgtatcgagcctcagattta----tgtgtacattttgggcactacatacatgaaccgtcggcc |
31057609 |
T |
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| Q |
113 |
atgccttaaaattaaaatccattcaaacattcattcacccatacattcatatcataaaattaacattgaaatttgccaaagttctaagtcattcattcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31057610 |
atgccttaaaattaaaatccattcaaacattcattcacccatacattcatatcataaaattaacattgaaatttgccaaatttctaagtcattcattcat |
31057709 |
T |
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| Q |
213 |
tccaatttgaaataacatt------------aaataacaacattcatcatttacatgaaataacattaaaaacaaagtgcaacactattcatcaaaatgt |
300 |
Q |
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|||||||||||| | ||| |||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |
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| T |
31057710 |
tccaatttgaaaaataattgtttaggtaatagaataccaacattcatcatttacatgaaaaaaaattaaaaacaaa-tgcaacactattcatcaaaatgt |
31057808 |
T |
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| Q |
301 |
aacaataatagcaacataatttat |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
31057809 |
aacaataatagcaacataatttat |
31057832 |
T |
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