View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_13 (Length: 344)
Name: NF4016_low_13
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 14163077 - 14162769
Alignment:
| Q |
20 |
tgtagcactttgcttccaatggaatcttgacttatacattgtgttccgatatcttcaagctgttgcggtgctaaaacttcgtcaacaaccgatcttgcta |
119 |
Q |
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| T |
14163077 |
tgtagcactttgcttccaatggaatcttgacttatacattgtgttccgatatcttcaagctgttgcggtgctaaaacttcgtcaacaaccgatcttgcta |
14162978 |
T |
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| Q |
120 |
gaaacatagcaagatcttcaacaactacaggattgtctaaagcagtatcatctgctgattcaattagcatcacaaaaccattgacaacatcgtcaggtgg |
219 |
Q |
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| T |
14162977 |
gaaacatagcaagatcttcaacaactacaggattgtctaaagcagtatcatctgctgattcaattagcatcacaaaaccattgacaacatcgtcaggtgg |
14162878 |
T |
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| Q |
220 |
aaaacaaagcgatgaaagtaacaccgaagccatttctttctctctattctttctatccattgctaatgttattagctttttcacgaagattgcatttagt |
319 |
Q |
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| T |
14162877 |
aaaacaaagcgatgaaagtaacaccgaagccatttctttctctctattctttctatccattgctaatgttattagctttttgacgaagattgcatttagt |
14162778 |
T |
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| Q |
320 |
tcaccacag |
328 |
Q |
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| T |
14162777 |
tcaccacag |
14162769 |
T |
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