View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_17 (Length: 316)
Name: NF4016_low_17
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 36288146 - 36287823
Alignment:
| Q |
1 |
agaaagacaacaacatgaagaatgaaactttgttgtatcctatgatcatgctcatgttttttgaaattgcatagaataatactaaatagttttatgtgtt |
100 |
Q |
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| T |
36288146 |
agaaagacaacaacatgaagaatgaaactttgttgtatcctatgatcatgctcatgttttttgaaattgaatagaataatactatatagttttatgcgtt |
36288047 |
T |
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| Q |
101 |
accaatattaatgatcaaatatgaaaaggagaagaagtttgaaaaatgaaatttggtatgtgagaaagtagg---------aatgataatacacatatgg |
191 |
Q |
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| T |
36288046 |
accaatattaatgatcaaatatgaaaaggagaagaagtttgaaaaatgaaatttggtatgtgagaaagtaggtgaaaatgcaatgataatacacatatgg |
36287947 |
T |
|
| Q |
192 |
agaataattgatttgacaagtttaggtggtattgatagtgaaaattcaccagcaccactttttgaggattagagataattaggtgaaaaaatgtgacgaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36287946 |
agaataattgatttgacaagtttaggtggtattgatagtgaaaattcaccagcaccactttttgagga-tagagataattaggtgaaaaaatgtgacgaa |
36287848 |
T |
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| Q |
292 |
attgagatagcatcagcatagttgt |
316 |
Q |
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||||||||||||||||||||||||| |
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| T |
36287847 |
attgagatagcatcagcatagttgt |
36287823 |
T |
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