View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_18 (Length: 308)
Name: NF4016_low_18
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 39 - 308
Target Start/End: Original strand, 25014121 - 25014393
Alignment:
| Q |
39 |
caaacaacaatttgattagatgtgtgtgattatgaaattcaatagaggatagtttgagtagacaatttttccatatgttcttaagtttccaagggactat |
138 |
Q |
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| T |
25014121 |
caaacaacaatttgattagatgtgtgtgattatgaaattca-tagaggatagtttgagtagacaatttttccttatgttcttaagtttccaagggactat |
25014219 |
T |
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| Q |
139 |
ataaggagacttgaacgccaaacaagctaatttagaatcactttcaatccataagtaattccaattcttcatataggcagtttccacaacaatactcact |
238 |
Q |
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| T |
25014220 |
ataaggagacttgaacgccaaacaagctattttagaatcactttcaatccataagtgattccaattcttcatatagtcagtttccacagcaatactcact |
25014319 |
T |
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| Q |
239 |
ccc----attagctcagcaaagagagcatttgaaataccaagattgattgcaaaacaaccctttctgaatattc |
308 |
Q |
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| T |
25014320 |
cccattaattagctcagcaaagagagcatttgaaataccaagattgattgcaaaacaaccctttctgaatattc |
25014393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 55 - 297
Target Start/End: Original strand, 33068068 - 33068308
Alignment:
| Q |
55 |
tagatgtgtgtgattatgaaattcaatagaggatagtttgagtagacaatttttccatatgttcttaagtttccaagggactatataaggagacttgaac |
154 |
Q |
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| T |
33068068 |
tagatgtgtgtgatcatgaaattca-tataggacagtttgactaggggatttttccatctgttcttaagtttccaaggcactatatgaggagacttgaac |
33068166 |
T |
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| Q |
155 |
gccaaacaagctaatttagaatcactttcaatccataagtaattccaattcttcatataggcagtttccacaacaatactcactcccattagctcagcaa |
254 |
Q |
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| T |
33068167 |
gccaagcaagctaatttagaatcactttcaatccataagtgattcga-ttcttcatataggcagtttccacaacagtaatcactcccattagcttagcaa |
33068265 |
T |
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| Q |
255 |
agagagcatttgaaataccaagattgattgcaaaacaaccctt |
297 |
Q |
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| T |
33068266 |
agagagcatttgaaattccaagattgattgcaaaacaaccctt |
33068308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 19955338 - 19955154
Alignment:
| Q |
107 |
ttccatatgttcttaagtttccaagggactatataaggagacttgaacgccaaacaagctaatttagaatcactttcaatccataagtaattccaattct |
206 |
Q |
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| T |
19955338 |
ttccatatattcttgagcttccaaggaactatgtgatgagacttgaaggccaaggtagccaactttaaatcactttcaatccataagtgattctagtttt |
19955239 |
T |
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| Q |
207 |
tcatataggcagtttccacaacaatactcactcccattagctcagcaaagagagcatttgaaataccaagattgattgcaaaaca |
291 |
Q |
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| T |
19955238 |
tgtcataagcaatttccaaaactaaaatcactccctttggctcaggaaaaagggcatttgaaattcctagattgattgcaaaaca |
19955154 |
T |
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