View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_19 (Length: 286)
Name: NF4016_low_19
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 50725650 - 50725891
Alignment:
| Q |
1 |
tataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttgactaaaagaggtcctatctcaacaacagcaccatatccaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50725650 |
tataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttgactaaaagaggtcctatctcaacaacagcaccatatccaattg |
50725749 |
T |
|
| Q |
101 |
aggagcatccaggtcctaattcaaagacaacgttacaaaatgaaatgtagcatcagaaaataaatatgactatagttagatctctacaaccatacatnnn |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50725750 |
aggagcatccaggtcctaattcaaagacaacattacaaaatgaaatgtagcatcagaaaataaatatgactatagttagatctctacaaccatacataaa |
50725849 |
T |
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| Q |
201 |
nnnncaatatgtttaaatttttatttataatattccctcccttc |
244 |
Q |
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| T |
50725850 |
aaaacaatatgtttaaa-ttttatttataata-tccctcccttc |
50725891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 50733801 - 50733973
Alignment:
| Q |
1 |
tataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttgactaaaagaggtcctatctcaacaacagcaccatatccaattg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50733801 |
tataaaccttgactccaagagtatgggttaaattttagtccttcaccatttttgttgactaaaagaggtcctatctcaacaacagcaccacctccaattg |
50733900 |
T |
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| Q |
101 |
aggagcatccaggtcctaattcaaagacaacgttac-aaaatgaaatgtagcatcagaaaataaatatgacta |
172 |
Q |
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||||||||||||||||| | |||||| ||| | || ||||||||| ||||||||| ||||||||||||||| |
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| T |
50733901 |
aggagcatccaggtcctgactcaaaggcaaaatgacaaaaatgaaaagtagcatcactaaataaatatgacta |
50733973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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