View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_20 (Length: 276)
Name: NF4016_low_20
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 46631527 - 46631799
Alignment:
| Q |
1 |
taagtctcctcttcatgttccttgtaatgaaatcgtatctactccatctagagttagaaaagcagaaaaaattcacatcaaataaccaaagtaatcattc |
100 |
Q |
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| T |
46631527 |
taagtctcctcttcatgttccttgtaatgaaatcgcatctactccatctagagttagaaaagcagaaaaaattcacatcaaataaccaaagtaatcattc |
46631626 |
T |
|
| Q |
101 |
gagacattgaggagataataatttccatccattcttattttatcattatatatatgtcatgtttggataaaaaacttaaagttcaaactcaatgaattag |
200 |
Q |
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| T |
46631627 |
gagacattgaggagataataatttccatccattcttattttatcattatatatatgtcatgtttggataaacaacttaaagttcaaactcaatgaattag |
46631726 |
T |
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| Q |
201 |
ctatgaaggttggtaaaaatttgaatcattatattgagaaaaagggcaacaaagagaaatataagctgaatat |
273 |
Q |
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| T |
46631727 |
caatgaaggttggtaaaaattggaataattatattgagaaaaagggcaacaaagagaaatataagttgaatat |
46631799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 15767380 - 15767278
Alignment:
| Q |
38 |
tctactccatct-agagttagaaaagca---gaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggagataataatttccatccatt |
133 |
Q |
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|||||||||||| || |||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||| |||| |
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| T |
15767380 |
tctactccatcttagggttagaaaagaaccggaaaaaattcacatcaaataaccaaagt-atcattcgggacattgaagagatactaatttccatacatt |
15767282 |
T |
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| Q |
134 |
ctta |
137 |
Q |
| |
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|||| |
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| T |
15767281 |
ctta |
15767278 |
T |
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