View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_23 (Length: 253)
Name: NF4016_low_23
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 46631181 - 46630948
Alignment:
| Q |
9 |
gtacagtatgtctattcatttggcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagt |
108 |
Q |
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| T |
46631181 |
gtacagtatgtctattcatttggcagctttagaacacaatttgcaagtaaggcaagaggagcatcga---tacattcaaaaccaatttgtttacaacagt |
46631085 |
T |
|
| Q |
109 |
cagaaactccatgatgacagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631084 |
cagaaactccatgatgacagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctacc |
46630985 |
T |
|
| Q |
209 |
attaccacctccattcaaatgcttttcttcctatgct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
46630984 |
tttaccacctccattcaaatgcttttcttcctatgct |
46630948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 46172622 - 46172828
Alignment:
| Q |
31 |
gcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagat |
130 |
Q |
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| T |
46172622 |
gcagccttagaacacaatttgcaagtcaggcaggagaagcatcggc---acattcaaagccaatttgtttccaaaag-ctggaattccatgatgacagat |
46172717 |
T |
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| Q |
131 |
agc-aggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagct---accattaccacctccattcaa |
226 |
Q |
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| T |
46172718 |
aggtagaaagcttaaaaa-taaccactattgatctctattctttaacttaaccaagtggcttgcaaatatttagctgacactactaccatctccaatcaa |
46172816 |
T |
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| Q |
227 |
atgcttttcttc |
238 |
Q |
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|||||||||||| |
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| T |
46172817 |
atgcttttcttc |
46172828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 46620503 - 46620454
Alignment:
| Q |
157 |
attgacctctactctttaacttaaccaagtaacttgcaaatatgtagcta |
206 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
46620503 |
attgacctctactctttaacttaaccaattggcttgcaaatatctagcta |
46620454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 15767749 - 15767976
Alignment:
| Q |
9 |
gtacagtatgtctattcatttggcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagt |
108 |
Q |
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|||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||| ||||| | ||||||||||||||||||| |||||| ||| |
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| T |
15767749 |
gtacagtatgtctagtcatttggcagccttagaactcaatttgcaagtaaggcaagagaagcattaa---tacattcaaaaccaatttgattacaaaagt |
15767845 |
T |
|
| Q |
109 |
cagaaactccatgatgacagatag-caggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctac |
207 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||| || |||||| |
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| T |
15767846 |
cagaaactccatgatgacagataggcaggtaacttaaaaaattaccactattgacctctactctttaacttaaccaagtagcttgaaaacatttagctaa |
15767945 |
T |
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| Q |
208 |
cattaccacctccattcaaatgcttttcttc |
238 |
Q |
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|| ||| | ||||| ||||||| |||||||| |
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| T |
15767946 |
cactacgatctccaatcaaatgtttttcttc |
15767976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 18373693 - 18373856
Alignment:
| Q |
79 |
tacattcaaaaccaatttgtttacaacagtcagaaactccatgatga---cagatag-caggtagcttaaaaaattacaacaattgacctctactcttta |
174 |
Q |
| |
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||||||| |||||| ||||||| ||| |||| |||||||||||||| ||||||| || ||| ||||||| | | ||| |||||||||||||||||| |
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| T |
18373693 |
tacattctaaaccattttgtttccaaaggtcaaaaactccatgatgatgacagataggcatgtatcttaaaagaaaataactattgacctctactcttta |
18373792 |
T |
|
| Q |
175 |
acttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgcttttcttc |
238 |
Q |
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|||||||||| | ||||||||||| |||||| || ||||| ||||||| ||||| |||||||| |
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| T |
18373793 |
acttaaccaattggcttgcaaatatctagctaacactaccatctccattgaaatgtttttcttc |
18373856 |
T |
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