View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_25 (Length: 249)
Name: NF4016_low_25
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36400871 - 36401113
Alignment:
| Q |
1 |
atatcaccttatcttgctatttt---tatatacttctcactgcaatccatcttgcactctttaactaattaaaaaggaaaaattattatccnnnnnnnnn |
97 |
Q |
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| T |
36400871 |
atatcaccttatcttgctattttaattatatacttctcactgcaatccatcttgcactctttaactaattaaaaaggaaaaattattatccttttttttt |
36400970 |
T |
|
| Q |
98 |
nngtgcctaaaaaagttttcaatttttaaaatatgaaaattaacttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36400971 |
t-gtgcctaaaaaagttttcaatttttaaaatatgaaaactaacttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaa |
36401069 |
T |
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| Q |
198 |
tctcaagaactctagccactttagttcctctttttgcctttgct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36401070 |
tctcaagaactctagccactttagttcctctttttgcctctgct |
36401113 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 21427486 - 21427581
Alignment:
| Q |
141 |
cttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaatctcaagaactctagccactttagttcctctttttgcct |
236 |
Q |
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|||| ||||| ||| |||| | ||||| ||||||||| |||||||||| || |||||||||||||| || | | ||||||||||||||| |||| |
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| T |
21427486 |
cttaaaagaaggatcttttggaaggagctcttccaacaactctcataaggttggcaatctcaagaacccttgaaattttagttcctcttttagcct |
21427581 |
T |
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