View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_low_27 (Length: 247)

Name: NF4016_low_27
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_low_27
NF4016_low_27
[»] chr1 (8 HSPs)
chr1 (4-130)||(51480512-51480632)
chr1 (6-130)||(51497370-51497488)
chr1 (146-232)||(30206568-30206654)
chr1 (6-130)||(30206714-30206832)
chr1 (170-232)||(51480710-51480772)
chr1 (6-82)||(51455813-51455889)
chr1 (146-221)||(51497542-51497617)
chr1 (149-232)||(51455991-51456074)
[»] chr5 (4 HSPs)
chr5 (6-79)||(43160746-43160819)
chr5 (4-95)||(27396518-27396609)
chr5 (156-210)||(43160930-43160984)
chr5 (146-214)||(27396695-27396763)
[»] chr6 (1 HSPs)
chr6 (1-44)||(18085608-18085651)
[»] scaffold0020 (1 HSPs)
scaffold0020 (6-91)||(137289-137374)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 51480512 - 51480632
Alignment:
Q  4 agaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttgagtttatc 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||      |||||||||||||||||    
T  51480512 agaatgctcttttaacatttgtcttctttgttgttgtgagcttcgttgtgggaagcttctaggtggtacagatccaa------ttgagtttgagtttatc 51480605  T
Q  104 ttccgaggacgtgattatctgcatggt 130  Q
    |||||||| ||||||||||| ||||||    
T  51480606 ttccgaggccgtgattatcttcatggt 51480632  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 51497370 - 51497488
Alignment:
Q  6 aatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttgagtttatctt 105  Q
    |||| |||||| |||||||||| |||||||  |||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||    
T  51497370 aatgttcttttgacatttgtctcctttgttgctgtgagcttcgtggtgggaagcttctaggtggtgcagatccaa------ttgagtttgagtttatctt 51497463  T
Q  106 ccgaggacgtgattatctgcatggt 130  Q
    |||||| ||||||||||| ||||||    
T  51497464 ccgagggcgtgattatcttcatggt 51497488  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 30206654 - 30206568
Alignment:
Q  146 gattcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgg 232  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  30206654 gattcgtgaatggtcaagatctggatggcttgcagacagtgatggtagcattccctgtccaaaagccgatgatgattgtgatcatgg 30206568  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 30206832 - 30206714
Alignment:
Q  6 aatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttgagtttatctt 105  Q
    ||||||||||| |||||||||| |||||||  || ||||||||| |||||||||||||||||||||||||||||||  |||||||      ||||||||     
T  30206832 aatgctcttttgacatttgtctcctttgttgctgcgagcttcgtggtgggaagcttctaggtggtgcagatccaatcaagtttga------gtttatcta 30206739  T
Q  106 ccgaggacgtgattatctgcatggt 130  Q
    |||||| | ||||||||||||||||    
T  30206738 ccgagggcttgattatctgcatggt 30206714  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 51480710 - 51480772
Alignment:
Q  170 gtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgg 232  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  51480710 gtggcatgcagatagtgatggtagcattccctgtccaaaagccgatgatgattgtggtcatgg 51480772  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 51455813 - 51455889
Alignment:
Q  6 aatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaatt 82  Q
    ||||||||||| || ||||||| || ||||  || ||||| ||| ||||||||||||||||||||||||||||||||    
T  51455813 aatgctcttttgacctttgtctcctctgttgctgcgagctccgtggtgggaagcttctaggtggtgcagatccaatt 51455889  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 51497542 - 51497617
Alignment:
Q  146 gattcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgat 221  Q
    ||||| |||||||||| |||||| ||||| |||| ||  |||||| |||||||||||||||||||| |||| ||||    
T  51497542 gattcctgaatggtcaagatctgggtggcatgcaaatgatgatggtagcattccctgtccaaaagccgatggtgat 51497617  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 51455991 - 51456074
Alignment:
Q  149 tcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctgatgatgattgtggtcatgg 232  Q
    |||||| |||||| |||||| ||||| |||| ||   ||||| |||||||| ||||||||||||||| |||| |||| ||||||    
T  51455991 tcgtgagtggtcaagatctgggtggcatgcaaatgtcgatggtagcattccttgtccaaaagctgataatgaatgtgatcatgg 51456074  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 43160746 - 43160819
Alignment:
Q  6 aatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatcca 79  Q
    ||||| |||||||| ||||||| || |||| ||||||||| ||| |||||||||||||||||||| ||||||||    
T  43160746 aatgcccttttaacctttgtctcctctgttgttgtgagctccgtggtgggaagcttctaggtggtccagatcca 43160819  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 27396518 - 27396609
Alignment:
Q  4 agaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgagtttg 95  Q
    |||||| || ||| || ||||||| || ||||  |||||||||||||||||| ||||||||||||| ||||| ||| |||| ||||||||||    
T  27396518 agaatgttcctttgacctttgtctcctctgttgctgtgagcttcgttgtgggcagcttctaggtggggcagaaccatttgattttgagtttg 27396609  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 43160930 - 43160984
Alignment:
Q  156 tggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaag 210  Q
    |||||| |||||| |||||| |||||| | ||||| |||||||||||||||||||    
T  43160930 tggtcaagatctgggtggctagcagatggcgatggtagcattccctgtccaaaag 43160984  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 27396695 - 27396763
Alignment:
Q  146 gattcgtgaatggtcacgatctgtgtggcttgcagatagtgatggaagcattccctgtccaaaagctga 214  Q
    |||||||  |||||||  ||||| ||||| ||||||||||||||| |  ||||||||||||||| ||||    
T  27396695 gattcgtacatggtcaaaatctgggtggcatgcagatagtgatggcaatattccctgtccaaaacctga 27396763  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18085608 - 18085651
Alignment:
Q  1 taaagaatgctcttttaacatttgtcttctttgttattgtgagc 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18085608 taaagaatgctcttttaacatttgtcttctttgttgttgtgagc 18085651  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 137374 - 137289
Alignment:
Q  6 aatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagcttctaggtggtgcagatccaattgagtttgag 91  Q
    ||||||||||| || ||||||||| |||||    ||| |||||| ||||  |||||||||||||||| |||||| |||||||||||    
T  137374 aatgctcttttgacctttgtcttcgttgttgcgctgaacttcgtcgtggtgagcttctaggtggtgctgatccagttgagtttgag 137289  T

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