View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_3 (Length: 481)
Name: NF4016_low_3
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 26733266 - 26733729
Alignment:
| Q |
18 |
aagtgtgtcttttacaaagaattgcatctttgttacaaaagtaaattaagtctactcgtggacttaactagtgggaaataggatattacacaaagattat |
117 |
Q |
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| T |
26733266 |
aagtgtgtcttttacaaagaattgcatctttgttacaaaagtaaattaagtctactcgtggacttaactagtgggaaataggatattacacaaagattat |
26733365 |
T |
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| Q |
118 |
actccactctaccatatgttaaccaataagataacatcaattaaattaactataattgtacttattataaatacagaatgcaatcactgcatgtagtgtg |
217 |
Q |
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| T |
26733366 |
actccactctaccatatgttaaccaataagataacatcaattaaattaactataattgtacttattataaatacagaatgcaatcactgcatgtagtgtg |
26733465 |
T |
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| Q |
218 |
a-----gtgtggtaccaaaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaag |
312 |
Q |
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| T |
26733466 |
agagtggtgtggtaccaaaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaaa |
26733565 |
T |
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| Q |
313 |
catcacatgttatttgctactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26733566 |
catcacatgttatttgctactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaa |
26733665 |
T |
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| Q |
413 |
ggaaagaaagccaaagatgatgcactcaaagactggaaattttcaacttctgcttcatctcact |
476 |
Q |
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| T |
26733666 |
ggagagaaagccaaagatgatgcactcaaagactggaaattttcaacttctgcttcagctcact |
26733729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 119 - 469
Target Start/End: Original strand, 26725058 - 26725408
Alignment:
| Q |
119 |
ctccactctaccatatgttaaccaataagataacatcaattaaattaactataattgtacttattataaatacagaatgcaatcactgcatgtagtgtga |
218 |
Q |
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|||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26725058 |
ctccactccaccatatgtgaacaaataagataatatcaattaaattaactataattgtacttattataaatatagaatgcaatcactgcatgtagtgtga |
26725157 |
T |
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| Q |
219 |
gtgtggtaccaaaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcac |
318 |
Q |
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| T |
26725158 |
gtgtggtaccaaaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaacttagcaaaagagaaagatgaaaagcatcac |
26725257 |
T |
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| Q |
319 |
atgttatttgctactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
26725258 |
atgttatttgctactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagag |
26725357 |
T |
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| Q |
419 |
aaagccaaagatgatgcactcaaagactggaaattttcaacttctgcttca |
469 |
Q |
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| T |
26725358 |
aaagccaaagatgatgcactcaaagactggaaattttcaacttctgcttca |
26725408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 26724772 - 26724814
Alignment:
| Q |
18 |
aagtgtgtcttttacaaagaattgcatctttgttacaaaagta |
60 |
Q |
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||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
26724772 |
aagtgcgtctttaacaaagaattgcatctttgtcacaaaagta |
26724814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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