View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_low_30 (Length: 236)

Name: NF4016_low_30
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_low_30
NF4016_low_30
[»] chr1 (4 HSPs)
chr1 (1-220)||(1491664-1491883)
chr1 (12-219)||(1490380-1490587)
chr1 (2-208)||(1464287-1464492)
chr1 (45-129)||(1495270-1495354)
[»] chr8 (1 HSPs)
chr8 (26-208)||(26791999-26792181)
[»] chr3 (1 HSPs)
chr3 (47-124)||(50278097-50278174)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1491883 - 1491664
Alignment:
Q  1 ctttccacttctttaatctttttaaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctata 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1491883 ctttccacttctttaatcttttttaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctata 1491784  T
Q  101 gctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgcttctctctgttatttaccatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1491783 gctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgcttctctctgttatttaccatag 1491684  T
Q  201 tctttcttgttagtgaatgc 220  Q
    ||||||||||||||||||||    
T  1491683 tctttcttgttagtgaatgc 1491664  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 1490380 - 1490587
Alignment:
Q  12 tttaatctttttaaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactatttt 111  Q
    |||||||||||| |||||||| |||||| ||| ||||||||| || | |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  1490380 tttaatcttttttaaaccattcaaatggcttaccttgcaactacaacgtgtttcttgtcttgctctacaatctctgaaagctccctttagctactatttt 1490479  T
Q  112 cattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgcttctctctgttatttaccatagtctttcttgtt 211  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||| |||| || || ||||||||||||||||| || |||||||||||||||||||||    
T  1490480 cattcaaaaggttcgaggtaaaaggctgaacaccatgaagtgatccctgtgctgctttccattgtgcttctctctcttctttaccatagtctttcttgtt 1490579  T
Q  212 agtgaatg 219  Q
    ||||||||    
T  1490580 agtgaatg 1490587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 1464492 - 1464287
Alignment:
Q  2 tttccacttctttaatctttttaaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatag 101  Q
    |||||||||||  ||||||||| || ||||| || ||| ||| ||||| | ||||||| |||||||| ||||||||||||||||||||||||||  ||||    
T  1464492 tttccacttctgaaatctttttcaa-ccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatag 1464394  T
Q  102 ctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgcttctctctgttatttaccatagt 201  Q
    |||||||  ||||||| |  ||| ||||||  ||| |||||||||||  |||||| ||| | || | ||||||||||||| || | || | |||||||||    
T  1464393 ctactatactcattgatagtgttggaggtaggaggctgaagaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagt 1464294  T
Q  202 ctttctt 208  Q
    |||||||    
T  1464293 ctttctt 1464287  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 1495270 - 1495354
Alignment:
Q  45 cttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtttgagg 129  Q
    ||||||||||||||| || ||||| ||||||| |||||||| ||||| || ||||||||| | ||||||||||||| ||| ||||    
T  1495270 cttgcaacttcagcacgtctcttggcttgctccgcaatctccgaaagttctctatagctattcttttcattgaaaacgttggagg 1495354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 26792181 - 26791999
Alignment:
Q  26 aaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggttt 125  Q
    ||||||| || ||| ||| ||||||| ||| ||| ||||| || || | |||||||| |||||||||||| |||||||||||||||||||||||  ||      
T  26792181 aaccattcaagtggcttaccttgcaatttcggcacgtttcctggctagatctgcaatttctgaaagctccttatagctactattttcattgaaagtgtag 26792082  T
Q  126 gaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgcttctctctgttatttaccatagtctttctt 208  Q
    ||| || |||| ||||||||||||| ||||| |||||||| | ||||||||||||| ||||||| | ||||||||||||||||    
T  26792081 gagctagaaggctgaagaccatgaattgatctttgtgttgatgcccattgtgcttccctctgttctctaccatagtctttctt 26791999  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 50278174 - 50278097
Alignment:
Q  47 tgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtt 124  Q
    ||||||||||||  || ||||| ||||||| |||||||| ||||||||||| |||||| | || ||||||||||||||    
T  50278174 tgcaacttcagcgcgtctcttggcttgctcagcaatctcagaaagctccctgtagctattcttgtcattgaaaaggtt 50278097  T

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