View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_32 (Length: 228)
Name: NF4016_low_32
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 10477567 - 10477365
Alignment:
| Q |
21 |
cttttgtattctgatgaataatgttgaatatatgaaaaaatctatcaaaccnnnnnnngttgaacatgaagttgagttgctatcatcattctgcgatgtc |
120 |
Q |
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| T |
10477567 |
cttttgtattctgatgaataatgttgaatatatgaaaaaatctatcaaaccaaaaaaagttgaacatgaagttgagttgctatcatcattctgtgatgtc |
10477468 |
T |
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| Q |
121 |
ttctcctcctcaataagacaaacaaattggctaaaaaccatgtttgtagatatactcaaaattcaaaaatacagatgaatatgcagaattctatagccct |
220 |
Q |
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| T |
10477467 |
ttctcctcttcaataagacaaacaaattggctaaaaaccatgtttgtagatatactcaaaattcaaaaatacagatgaatatgcagaattctatagccct |
10477368 |
T |
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| Q |
221 |
ttt |
223 |
Q |
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||| |
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| T |
10477367 |
ttt |
10477365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 2855574 - 2855448
Alignment:
| Q |
89 |
aagttgagttgctatcatcattctgcgatgtcttctcctcctcaataagacaaacaaattggctaaaaaccatgtttgtagatatactcaaaattc-aaa |
187 |
Q |
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||||||||||||| ||||||||||| |||| || ||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||||| || ||| |
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| T |
2855574 |
aagttgagttgctttcatcattctgtaatgtgttttcctctgcaataagataaacaagttggcgaaaaaccatgtttgcagatatactcaaaactcaaaa |
2855475 |
T |
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| Q |
188 |
aatacagatgaatatgcagaattctat |
214 |
Q |
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|| | || |||||||| |||||||||| |
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| T |
2855474 |
aaaatagttgaatatgtagaattctat |
2855448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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