View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_34 (Length: 220)
Name: NF4016_low_34
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 46584058 - 46584261
Alignment:
| Q |
1 |
caaacgcgataacaaacaattgacatttcaatcagtatttaacacctctcgcgccttcacaatcttttttcacacttcatccaaattccaatttcgcatt |
100 |
Q |
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| T |
46584058 |
caaacgcgataacaaacaattgacatttcaatcagtatttaacacctctcgcgccttcacaatcttttttcacacttcatccaaattccaatttcgcatt |
46584157 |
T |
|
| Q |
101 |
tctattttactcattccctccattttcggatcgcnnnnnnngaagaaacaatggattccactaccaccacaacaaccacaaccaccaaaggtgccggtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46584158 |
tctattttactcattccctccattttcggatcacaaaaaaagaagaaacaatggattccaccaccaccacaacaaccacaaccaccaaaggtgccggtgg |
46584257 |
T |
|
| Q |
201 |
aaga |
204 |
Q |
| |
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|||| |
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| T |
46584258 |
aaga |
46584261 |
T |
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