View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4016_low_35 (Length: 215)
Name: NF4016_low_35
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 2483950 - 2484077
Alignment:
| Q |
18 |
ctatcatgaatacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggtttaatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2483950 |
ctatcatgaatacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggataataagagtttcgttgggtttaatca |
2484049 |
T |
|
| Q |
118 |
tcgaacgagacccacaagataggaatac |
145 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2484050 |
tcgaacgagacccacaagataggaatac |
2484077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 7438996 - 7438889
Alignment:
| Q |
38 |
tagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggtttaatcatcgaacgagacccacaagat |
137 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||| ||||||||||| || ||| |||||||||||||| |
|
|
| T |
7438996 |
tagtttatgtatatatggctcataggacatgtgagttgcatctctacttaggataataggagttttattgggtttaattattgaatgagacccacaagat |
7438897 |
T |
|
| Q |
138 |
aggaatac |
145 |
Q |
| |
|
|||||||| |
|
|
| T |
7438896 |
aggaatac |
7438889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 7340285 - 7340176
Alignment:
| Q |
23 |
atgaatacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggtttaatcatcgaa |
122 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
7340285 |
atgaatgcaagataatagttaatgtatatatggctc-------------gtagcatctccacttaggataataagagttttgttgggtttaatcatcgaa |
7340199 |
T |
|
| Q |
123 |
cgagacccacaagataggaatac |
145 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7340198 |
cgagacccacaagataggaatac |
7340176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 2632067 - 2632116
Alignment:
| Q |
41 |
ttaatgtatatatggctcatagtacatgtgagttgcatctccacttagga |
90 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
2632067 |
ttaaagtatatatggctcatagtacaagtgagttgcatctccactcagga |
2632116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 7437800 - 7437756
Alignment:
| Q |
36 |
aatagttaatgtatatatggctcatagtacatgtgagttgcatct |
80 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
7437800 |
aatagttaatgtatatatggatcatagtacaggtgcattgcatct |
7437756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 18756698 - 18756803
Alignment:
| Q |
36 |
aatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggtttaatcatcgaacgagacccacaag |
135 |
Q |
| |
|
|||| |||| |||||| | |||||||||||| || ||||||||||| | |||||||| || ||||| ||| ||||| ||||||||| ||| || || |
|
|
| T |
18756698 |
aataattaacgtatatgtagctcatagtacaagtcagttgcatctctatttaggataatatgagttg----gggattaattatcgaacgaaaccaacgag |
18756793 |
T |
|
| Q |
136 |
ataggaatac |
145 |
Q |
| |
|
|||||||||| |
|
|
| T |
18756794 |
ataggaatac |
18756803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University