View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_36 (Length: 203)
Name: NF4016_low_36
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 3798319 - 3798439
Alignment:
| Q |
22 |
gtaaagtgaaacaaaactattattcaaaaacgacatatattgtgaagcagagggagtagtttttaaattagactcttgnnnnnnnaccactcatttgagt |
121 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
3798319 |
gtaaagtgaaacaaaactattatttaaaaacgacatatattatgaagcagagggagtagtttttaaattagactcttgtttttttaccactcacttgagt |
3798418 |
T |
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| Q |
122 |
tttgaaactagaatcttcaac |
142 |
Q |
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| T |
3798419 |
tttgaaattagaatcttcaac |
3798439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 3806046 - 3806102
Alignment:
| Q |
131 |
agaatcttcaacttactatcatttaattcaaatcagtttaactactcaacgatcaaa |
187 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
3806046 |
agaatcttcaacttattatcatttaattcaaatcagttgaactactcaacgatcaaa |
3806102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 3798455 - 3798511
Alignment:
| Q |
131 |
agaatcttcaacttactatcatttaattcaaatcagtttaactactcaacgatcaaa |
187 |
Q |
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||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
3798455 |
agaatcttcaatttattatcatttaattcaaatcagttgagctactcaacgatcaaa |
3798511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 32838986 - 32838929
Alignment:
| Q |
22 |
gtaaagtgaaacaaaactattattcaaaaacgacatatattgtgaagcagagggagta |
79 |
Q |
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| T |
32838986 |
gtaaaatgaaacaaaattattcttcaaaaacgacatgtattgtgaagcagatggagta |
32838929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 39561949 - 39561895
Alignment:
| Q |
25 |
aagtgaaacaaaactattattcaaaaacgacatatattgtgaagcagagggagta |
79 |
Q |
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||||||||||||| |||| | |||||||||||| ||||||||| | ||||||||| |
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| T |
39561949 |
aagtgaaacaaaattattctccaaaaacgacatgtattgtgaaacggagggagta |
39561895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 48652444 - 48652489
Alignment:
| Q |
22 |
gtaaagtgaaacaaaactattattcaaaaacgacatatattgtgaa |
67 |
Q |
| |
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|||||||||||||||| |||| | ||||| |||||||||||||||| |
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| T |
48652444 |
gtaaagtgaaacaaaattattctccaaaagcgacatatattgtgaa |
48652489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 34458781 - 34458736
Alignment:
| Q |
22 |
gtaaagtgaaacaaaactattattcaaaaacgacatatattgtgaa |
67 |
Q |
| |
|
|||||||||||||||| |||| | ||||| |||||||||||||||| |
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| T |
34458781 |
gtaaagtgaaacaaaattattctccaaaagcgacatatattgtgaa |
34458736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 40261342 - 40261297
Alignment:
| Q |
22 |
gtaaagtgaaacaaaactattattcaaaaacgacatatattgtgaa |
67 |
Q |
| |
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|||| ||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
40261342 |
gtaatgtgaaacaaaattattcttcaaaagcgacatatattgtgaa |
40261297 |
T |
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