View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4016_low_4 (Length: 471)

Name: NF4016_low_4
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4016_low_4
NF4016_low_4
[»] chr1 (25 HSPs)
chr1 (239-457)||(3943587-3943805)
chr1 (240-457)||(41959633-41959850)
chr1 (240-457)||(9589455-9589672)
chr1 (286-457)||(13984447-13984618)
chr1 (240-368)||(44227848-44227976)
chr1 (240-281)||(284333-284374)
chr1 (240-297)||(284553-284610)
chr1 (240-297)||(321846-321903)
chr1 (240-281)||(3943060-3943101)
chr1 (240-281)||(9588670-9588711)
chr1 (240-281)||(23045515-23045556)
chr1 (240-301)||(24771906-24771967)
chr1 (240-281)||(41959078-41959119)
chr1 (241-281)||(27211200-27211240)
chr1 (251-281)||(52037356-52037386)
chr1 (240-281)||(321626-321667)
chr1 (240-281)||(13985003-13985044)
chr1 (240-297)||(23045279-23045336)
chr1 (240-281)||(24772141-24772182)
chr1 (239-268)||(30701952-30701981)
chr1 (240-301)||(33082960-33083021)
chr1 (240-297)||(40783657-40783714)
chr1 (240-281)||(40783893-40783934)
chr1 (240-281)||(47038086-47038127)
chr1 (240-268)||(17305954-17305982)
[»] chr5 (11 HSPs)
chr5 (240-457)||(15304822-15305039)
chr5 (239-281)||(15305224-15305266)
chr5 (239-281)||(25773648-25773690)
chr5 (240-281)||(12807089-12807130)
chr5 (240-281)||(30720728-30720769)
chr5 (234-281)||(16983252-16983299)
chr5 (239-297)||(36561098-36561156)
chr5 (240-297)||(12806853-12806910)
chr5 (240-297)||(30720492-30720549)
chr5 (240-281)||(36561335-36561376)
chr5 (240-297)||(40886610-40886667)
[»] chr6 (14 HSPs)
chr6 (240-457)||(19996322-19996539)
chr6 (240-281)||(15064930-15064971)
chr6 (240-281)||(1605579-1605620)
chr6 (240-281)||(7761301-7761342)
chr6 (232-281)||(13757200-13757249)
chr6 (240-281)||(29260192-29260233)
chr6 (240-297)||(29260412-29260469)
chr6 (240-297)||(1605798-1605855)
chr6 (239-296)||(7761521-7761578)
chr6 (240-281)||(8626482-8626523)
chr6 (240-297)||(8626702-8626759)
chr6 (240-281)||(17942443-17942484)
chr6 (240-281)||(19996727-19996768)
chr6 (234-278)||(31559732-31559776)
[»] chr3 (25 HSPs)
chr3 (240-457)||(19911998-19912215)
chr3 (240-457)||(44276775-44276992)
chr3 (240-444)||(38806178-38806382)
chr3 (240-457)||(12095247-12095464)
chr3 (284-449)||(4227369-4227540)
chr3 (309-449)||(4236415-4236562)
chr3 (240-281)||(38805245-38805286)
chr3 (239-297)||(13365063-13365121)
chr3 (240-281)||(198855-198896)
chr3 (240-281)||(12094582-12094623)
chr3 (240-297)||(19241668-19241725)
chr3 (240-281)||(29375138-29375179)
chr3 (240-281)||(36881282-36881323)
chr3 (240-281)||(13364843-13364884)
chr3 (240-281)||(19241904-19241945)
chr3 (240-281)||(19911509-19911550)
chr3 (240-281)||(27707400-27707441)
chr3 (240-297)||(29375352-29375409)
chr3 (240-297)||(36881500-36881557)
chr3 (240-281)||(43750137-43750178)
chr3 (240-281)||(44277467-44277508)
chr3 (240-297)||(46694110-46694167)
chr3 (240-281)||(46694346-46694387)
chr3 (240-268)||(20765196-20765224)
chr3 (240-268)||(39866375-39866403)
[»] scaffold0257 (2 HSPs)
scaffold0257 (240-457)||(23696-23913)
scaffold0257 (239-281)||(23466-23508)
[»] chr8 (26 HSPs)
chr8 (240-457)||(45278013-45278229)
chr8 (240-457)||(41305762-41305979)
chr8 (286-457)||(10647118-10647289)
chr8 (231-281)||(45278713-45278763)
chr8 (240-281)||(3585451-3585492)
chr8 (240-281)||(8697910-8697951)
chr8 (240-297)||(11646325-11646382)
chr8 (240-281)||(27034997-27035038)
chr8 (240-297)||(36068300-36068357)
chr8 (240-281)||(40918965-40919006)
chr8 (240-281)||(41307973-41308014)
chr8 (240-281)||(43275633-43275674)
chr8 (239-281)||(11174459-11174501)
chr8 (240-281)||(2540167-2540208)
chr8 (240-297)||(7147133-7147190)
chr8 (240-281)||(10646592-10646633)
chr8 (240-281)||(11646561-11646602)
chr8 (240-297)||(30999524-30999581)
chr8 (240-281)||(36068080-36068121)
chr8 (240-281)||(37345571-37345612)
chr8 (240-297)||(40058303-40058360)
chr8 (240-281)||(40058539-40058580)
chr8 (240-281)||(40486465-40486506)
chr8 (240-297)||(40918731-40918788)
chr8 (240-297)||(43275399-43275456)
chr8 (240-268)||(132251-132279)
[»] chr7 (11 HSPs)
chr7 (246-457)||(25059456-25059667)
chr7 (240-457)||(2910859-2911076)
chr7 (240-281)||(10981508-10981549)
chr7 (240-281)||(25060145-25060186)
chr7 (240-281)||(27813811-27813852)
chr7 (242-281)||(36453360-36453399)
chr7 (239-281)||(40348959-40349001)
chr7 (240-281)||(2911560-2911601)
chr7 (240-281)||(25614587-25614628)
chr7 (240-297)||(27814031-27814088)
chr7 (240-281)||(47110451-47110492)
[»] chr2 (15 HSPs)
chr2 (234-457)||(34222052-34222275)
chr2 (19-224)||(45112021-45112226)
chr2 (239-281)||(1102502-1102544)
chr2 (240-281)||(3518908-3518949)
chr2 (240-281)||(12969975-12970016)
chr2 (240-281)||(34224390-34224431)
chr2 (240-297)||(39938390-39938447)
chr2 (241-281)||(23366790-23366830)
chr2 (238-281)||(37673973-37674016)
chr2 (230-268)||(11841583-11841621)
chr2 (239-281)||(39938169-39938211)
chr2 (240-297)||(1646507-1646564)
chr2 (240-301)||(12969740-12969801)
chr2 (240-297)||(22388138-22388195)
chr2 (240-297)||(23367009-23367066)
[»] chr4 (19 HSPs)
chr4 (247-451)||(19362019-19362223)
chr4 (247-443)||(20543325-20543521)
chr4 (236-281)||(34324819-34324864)
chr4 (235-281)||(12071556-12071602)
chr4 (240-281)||(14261044-14261085)
chr4 (240-281)||(21310425-21310466)
chr4 (232-297)||(24706239-24706304)
chr4 (240-281)||(25704651-25704692)
chr4 (240-281)||(40122721-40122762)
chr4 (240-310)||(44569044-44569114)
chr4 (240-297)||(12071780-12071837)
chr4 (240-297)||(14261264-14261321)
chr4 (240-297)||(21310641-21310698)
chr4 (240-281)||(21661771-21661812)
chr4 (240-281)||(21670535-21670576)
chr4 (240-281)||(22321503-22321544)
chr4 (240-281)||(24706483-24706524)
chr4 (240-297)||(25704871-25704928)
chr4 (240-268)||(17610280-17610308)
[»] scaffold0054 (2 HSPs)
scaffold0054 (240-301)||(45669-45730)
scaffold0054 (240-281)||(45454-45495)
[»] scaffold1431 (1 HSPs)
scaffold1431 (240-281)||(135-176)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 239 - 457
Target Start/End: Complemental strand, 3943805 - 3943587
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctatttta 338  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3943805 gtactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctatttta 3943706  T
Q  339 cccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactc 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943705 cccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactc 3943606  T
Q  439 tcccaataaattattttcc 457  Q
    |||||| ||||||||||||    
T  3943605 tcccaagaaattattttcc 3943587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 240 - 457
Target Start/End: Complemental strand, 41959850 - 41959633
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41959850 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 41959751  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  41959750 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgactcaattttaagtagatttactcatacactct 41959651  T
Q  440 cccaataaattattttcc 457  Q
     |||| ||||||||||||    
T  41959650 tccaagaaattattttcc 41959633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 240 - 457
Target Start/End: Complemental strand, 9589672 - 9589455
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||||    
T  9589672 tactccctccgtttcaaaatacatgtctattttagagaaattttttgtttcaaaatacatatccatttcatagtttaagtatgcattttgtctattttac 9589573  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  9589572 ccttgtctaccaattaattgaattctagattttctccacaataattattttccactaataaatgttgacctaattttaagtagatttactcctgcactct 9589473  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  9589472 cccaagaaattattttcc 9589455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 286 - 457
Target Start/End: Original strand, 13984447 - 13984618
Alignment:
Q  286 gtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 385  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984447 gtttcaaaatacatatccatttcatagtttaaggatacatgttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 13984546  T
Q  386 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaataaattattttcc 457  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13984547 attttccactaataaatgttgatccaattttaagtagatttactcatgcactctcccaagaaattattttcc 13984618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 240 - 368
Target Start/End: Original strand, 44227848 - 44227976
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||   ||| |||||||||||||||||||||||||||||||    
T  44227848 tactccctccgtttcaaaatacatgtccattttggagaaattttttgtttcaaaatgcatgtcattttgatagtttaaggatacattttgtctattttac 44227947  T
Q  340 ccttgtctaccaattaattggattctaga 368  Q
    |||||| |||||| |||||||||||||||    
T  44227948 ccttgtataccaactaattggattctaga 44227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 284333 - 284374
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  284333 tactccctccgtttcaaaatacatgtccattttggagaaatt 284374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 284610 - 284553
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  284610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 284553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 321903 - 321846
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||  ||||||||||| |||||    
T  321903 tactccctccgtttcataatacttgtccattttagagaatatttttgtttcacaatac 321846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 3943060 - 3943101
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  3943060 tactccctccgtttcaaaatacatgtccattttggagaaatt 3943101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 9588670 - 9588711
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  9588670 tactccctccgtttcaaaatacatgtccattttggagaaatt 9588711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 23045556 - 23045515
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  23045556 tactccctccgtttcaaaatacatgtccattttggagaaatt 23045515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 24771906 - 24771967
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 301  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||||||    
T  24771906 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgt 24771967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 41959078 - 41959119
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  41959078 tactccctccgtttcaaaatacatgtccattttggagaaatt 41959119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 27211240 - 27211200
Alignment:
Q  241 actccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaatt 27211200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 281
Target Start/End: Complemental strand, 52037386 - 52037356
Alignment:
Q  251 ttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||||||||||||||||||||    
T  52037386 ttttaaaatacatgtccattttagagaaatt 52037356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 321626 - 321667
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  321626 tactccctccgtttcaaaatacatgttcattttggagaaatt 321667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 13985044 - 13985003
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggagaaatt 13985003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 23045279 - 23045336
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 23045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 24772182 - 24772141
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  24772182 tactccctccgtttcaaaatacatgtccattttgaagaaatt 24772141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 30701981 - 30701952
Alignment:
Q  239 gtactccctccgttttaaaatacatgtcca 268  Q
    ||||||||||||||||||||||||||||||    
T  30701981 gtactccctccgttttaaaatacatgtcca 30701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 33083021 - 33082960
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 301  Q
    |||||||||||||| | ||||| ||||||||||| ||||   |||||||||| |||||||||    
T  33083021 tactccctccgtttcataatacttgtccattttaaagaataattttgtttcacaatacatgt 33082960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 40783657 - 40783714
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40783657 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40783714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40783934 - 40783893
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  40783934 tactccctccgtttcaaaatacatgttcattttggagaaatt 40783893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 47038127 - 47038086
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggagaaatt 47038086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 17305954 - 17305982
Alignment:
Q  240 tactccctccgttttaaaatacatgtcca 268  Q
    |||||||||||||||||||||||||||||    
T  17305954 tactccctccgttttaaaatacatgtcca 17305982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 240 - 457
Target Start/End: Original strand, 15304822 - 15305039
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15304822 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 15304921  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304922 ccttatctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 15305021  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  15305022 cccaagaaattattttcc 15305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 15305266 - 15305224
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  15305266 gtactccctccgtttcaaaatacatgtccattttggagaaatt 15305224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 25773648 - 25773690
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  25773648 gtactccctccgtttcaaaatacatgtccattttggagaaatt 25773690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 12807130 - 12807089
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggagaaatt 12807089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 30720769 - 30720728
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  30720769 tactccctccgtttcaaaatacatgtccattttggagaaatt 30720728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 16983252 - 16983299
Alignment:
Q  234 aaatggtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||| ||||||||| |||| |||||||||||||||||| ||||||||    
T  16983252 aaatgatactccctctgtttcaaaatacatgtccattttggagaaatt 16983299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 36561098 - 36561156
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    ||||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  36561098 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 36561156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 12806853 - 12806910
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  12806853 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 12806910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 30720492 - 30720549
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  30720492 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 30720549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 36561376 - 36561335
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||| ||||||| ||||||||||||||||||||| |||||    
T  36561376 tactccatccgtttcaaaatacatgtccattttagaaaaatt 36561335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 40886610 - 40886667
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 240 - 457
Target Start/End: Original strand, 19996322 - 19996539
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19996322 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 19996421  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19996422 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatattgacccaattttaagtagatttactcatgcactct 19996521  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  19996522 cccaagaaattattttcc 19996539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 15064971 - 15064930
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  15064971 tactccctccgtttcaaaatacatgtccattttagagaaatt 15064930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 1605579 - 1605620
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  1605579 tactccctccgtttcaaaatacatgtccattttggagaaatt 1605620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 7761301 - 7761342
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  7761301 tactccctccgtttcaaaatacatgtccattttggagaaatt 7761342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 13757200 - 13757249
Alignment:
Q  232 ttaaatggtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||| ||||| |||||||| |||||||||||||||||| ||||||||    
T  13757200 ttaaatgatactctctccgtttcaaaatacatgtccattttggagaaatt 13757249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 29260192 - 29260233
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  29260192 tactccctccgtttcaaaatacatgtccattttggagaaatt 29260233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 29260469 - 29260412
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 29260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 1605855 - 1605798
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  1605855 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 1605798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 7761578 - 7761521
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaata 296  Q
    ||||||||||||||| | ||||| ||||||||||||||||   |||||||||| ||||    
T  7761578 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaata 7761521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 8626482 - 8626523
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  8626482 tactccctccgtttcaaaatacatgtccattttgaagaaatt 8626523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 8626759 - 8626702
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  8626759 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 8626702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 17942443 - 17942484
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  17942443 tactcccttcgtttcaaaatacatgtccatttttgagaaatt 17942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 19996768 - 19996727
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||| ||||| ||||||||    
T  19996768 tactccctccgtttcaaaatacatgtctattttggagaaatt 19996727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 31559732 - 31559776
Alignment:
Q  234 aaatggtactccctccgttttaaaatacatgtccattttagagaa 278  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||    
T  31559732 aaatggtactccctccgtttcataatacttctccattttagagaa 31559776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 240 - 457
Target Start/End: Complemental strand, 19912215 - 19911998
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19912215 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 19912116  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19912115 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 19912016  T
Q  440 cccaataaattattttcc 457  Q
     |||| ||||||||||||    
T  19912015 tccaagaaattattttcc 19911998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 240 - 457
Target Start/End: Original strand, 44276775 - 44276992
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44276775 tactctctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 44276874  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44276875 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 44276974  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  44276975 cccaagaaattattttcc 44276992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 240 - 444
Target Start/End: Complemental strand, 38806382 - 38806178
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  38806382 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtctatttcatagtttaaggatacattttgtctattttac 38806283  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38806282 ccttgtctaccaattaattggattctagattttctccataataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 38806183  T
Q  440 cccaa 444  Q
    |||||    
T  38806182 cccaa 38806178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 240 - 457
Target Start/End: Complemental strand, 12095464 - 12095247
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  12095464 tactccctccgtttcaaaatatatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatgcattttatctattttac 12095365  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12095364 ccttgtctaccaattaattggattctagattttcttcacaataattattttccactaataaatgtagacccaattttaagtagatttactcatgcactct 12095265  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  12095264 cccaagaaattattttcc 12095247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 284 - 449
Target Start/End: Complemental strand, 4227540 - 4227369
Alignment:
Q  284 ttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataa 383  Q
    |||||| ||||||||||||  ||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  4227540 ttgtttaaaaatacatgtatttttgataatttaaggatacattttgtatattttacccttgcctac-aattaattggattctaaattttctccacaataa 4227442  T
Q  384 ttattttccactaataaa-------tgttgacccaattttaagtagatttactcatgcactctcccaataaat 449  Q
    ||||||||||||||||||       |||||  |||||||||||| |||||| ||||||| |||||||| ||||    
T  4227441 ttattttccactaataaatataatgtgttggtccaattttaagtggatttattcatgcagtctcccaagaaat 4227369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 309 - 449
Target Start/End: Complemental strand, 4236562 - 4236415
Alignment:
Q  309 atagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaa------- 401  Q
    |||||||||||||||||||| | ||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||           
T  4236562 atagtttaaggatacattttatatattttacccttgccttgcaattaattggattctaaattttctccacaataattattttccactaataaatataatg 4236463  T
Q  402 tgttgacccaattttaagtagatttactcatgcactctcccaataaat 449  Q
    |||||  |||||||||||| |||||| |||||||||||||||| ||||    
T  4236462 tgttggtccaattttaagtggatttattcatgcactctcccaagaaat 4236415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 38805245 - 38805286
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38805245 tactccctccgttttaaaatacatgtccattttagagaaatt 38805286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 13365121 - 13365063
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    ||||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  13365121 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 13365063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 198855 - 198896
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  198855 tactccctccgtttcaaaatacatgtccattttggagaaatt 198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 12094582 - 12094623
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12094582 tactccctccgtttcaaaatacatgtccattttggagaaatt 12094623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 19241668 - 19241725
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  19241668 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 19241725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 29375138 - 29375179
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  29375138 tactccctccgtttcaaaatacatgtccattttggagaaatt 29375179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 36881282 - 36881323
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  36881282 tactccctccgtttcaaaatacatgtccattttggagaaatt 36881323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 13364843 - 13364884
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  13364843 tactccctccgtttcaaaatacatgttcattttggagaaatt 13364884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 19241945 - 19241904
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| | ||||||    
T  19241945 tactccctccgtttcaaaatacatgtccattttggtgaaatt 19241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 19911509 - 19911550
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  19911509 tactccctccgtttcaaaatacatgttcattttggagaaatt 19911550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 27707441 - 27707400
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||  ||||||||||||||||| ||||||||    
T  27707441 tactccctccgtttcgaaatacatgtccattttggagaaatt 27707400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 29375409 - 29375352
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  29375409 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 29375352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 36881557 - 36881500
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  36881557 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 36881500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 43750137 - 43750178
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  43750137 tactcccttcgtttcaaaatacatgtccattttggagaaatt 43750178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 44277508 - 44277467
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||| ||||| ||||||||    
T  44277508 tactccctccgtttcaaaatacatgtctattttggagaaatt 44277467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 46694110 - 46694167
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 46694167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 46694387 - 46694346
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||||| |||| ||||||||    
T  46694387 tactccctccgtttcaaaatacatgtcctttttggagaaatt 46694346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 20765196 - 20765224
Alignment:
Q  240 tactccctccgttttaaaatacatgtcca 268  Q
    |||||||||||||||||||||||||||||    
T  20765196 tactccctccgttttaaaatacatgtcca 20765224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 39866403 - 39866375
Alignment:
Q  240 tactccctccgttttaaaatacatgtcca 268  Q
    |||||||||||||||||||||||||||||    
T  39866403 tactccctccgttttaaaatacatgtcca 39866375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 240 - 457
Target Start/End: Complemental strand, 23913 - 23696
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23913 tactccatccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 23814  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23813 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatattgacccaattttaagtagatttactcatgcactct 23714  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  23713 cccaagaaattattttcc 23696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 23466 - 23508
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  23466 gtactccctccgtttcaaaatacatgtccattttggagaaatt 23508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 240 - 457
Target Start/End: Original strand, 45278013 - 45278229
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45278013 tactccctc-gtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 45278111  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278112 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 45278211  T
Q  440 cccaataaattattttcc 457  Q
    ||||| ||||||||||||    
T  45278212 cccaagaaattattttcc 45278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 240 - 457
Target Start/End: Original strand, 41305762 - 41305979
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  41305762 tactctctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatatattttgtctattttac 41305861  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41305862 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 41305961  T
Q  440 cccaataaattattttcc 457  Q
    || || ||||||||||||    
T  41305962 cctaagaaattattttcc 41305979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 286 - 457
Target Start/End: Complemental strand, 10647289 - 10647118
Alignment:
Q  286 gtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 385  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10647289 gtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 10647190  T
Q  386 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaataaattattttcc 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  10647189 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcctaagaaattattttcc 10647118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 45278763 - 45278713
Alignment:
Q  231 tttaaatggtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||  |||||||||||||| |||||||||||||||||| ||||||||    
T  45278763 tttaaatattactccctccgtttcaaaatacatgtccattttggagaaatt 45278713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 3585451 - 3585492
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggagaaatt 3585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 8697951 - 8697910
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  8697951 tactccctccgtttcaaaatacatgtccattttggagaaatt 8697910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 11646325 - 11646382
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  11646325 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 11646382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 27034997 - 27035038
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  27034997 tactccctccgtttcaaaatacatgtccattttggagaaatt 27035038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 36068357 - 36068300
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  36068357 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 36068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40919006 - 40918965
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  40919006 tactccctccgtttcaaaatacatgtccattttggagaaatt 40918965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 41308014 - 41307973
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  41308014 tactccctccgtttcaaaatacatgtccattttggagaaatt 41307973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 43275674 - 43275633
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  43275674 tactccctccgtttcaaaatacatgtccattttggagaaatt 43275633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 11174501 - 11174459
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||    
T  11174501 gtactccctccgtttcaaaatacatgttcattttggagaaatt 11174459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 2540208 - 2540167
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  2540208 tacttcctccgtttcaaaatacatgtccattttggagaaatt 2540167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 7147190 - 7147133
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 7147133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 10646592 - 10646633
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  10646592 tacttcctccgtttcaaaatacatgtccattttggagaaatt 10646633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 11646602 - 11646561
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  11646602 tactcccttcgtttcaaaatacatgtccattttggagaaatt 11646561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 30999524 - 30999581
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  30999524 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 30999581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 36068080 - 36068121
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||| ||||    
T  36068080 tactccctccgtttcaaaatacatgtccattttggaggaatt 36068121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 37345571 - 37345612
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  37345571 tactccctccgtttcaaaatacatgtccattttgaagaaatt 37345612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 40058303 - 40058360
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40058360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40058580 - 40058539
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||  ||||||||    
T  40058580 tactccctccgtttcaaaatacatgtccatttcggagaaatt 40058539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40486506 - 40486465
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  40486506 tactccctccgtttcaaaatacatgtccattttgaagaaatt 40486465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 40918731 - 40918788
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40918788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 43275399 - 43275456
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  43275399 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 43275456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 132279 - 132251
Alignment:
Q  240 tactccctccgttttaaaatacatgtcca 268  Q
    |||||||||||||||||||||||||||||    
T  132279 tactccctccgttttaaaatacatgtcca 132251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 246 - 457
Target Start/End: Original strand, 25059456 - 25059667
Alignment:
Q  246 ctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgt 345  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25059456 ctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgt 25059555  T
Q  346 ctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaat 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  25059556 ctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagcagatttactcatgcactctcccaag 25059655  T
Q  446 aaattattttcc 457  Q
    ||||||||||||    
T  25059656 aaattattttcc 25059667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 240 - 457
Target Start/End: Original strand, 2910859 - 2911076
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 339  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2910859 tactccctccgtttcaaaatacatgtctattttaaagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 2910958  T
Q  340 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910959 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 2911058  T
Q  440 cccaataaattattttcc 457  Q
     |||| ||||||||||||    
T  2911059 tccaaaaaattattttcc 2911076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 10981508 - 10981549
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  10981508 tactccctccgtttcaaaatacatgtccattttggagaaatt 10981549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 25060186 - 25060145
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  25060186 tactccctccgtttcaaaatacatgtccattttggagaaatt 25060145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 27813811 - 27813852
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  27813811 tactccctccgtttcaaaatacatgtccattttggagaaatt 27813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 36453399 - 36453360
Alignment:
Q  242 ctccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaatt 36453360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 40348959 - 40349001
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||    
T  40348959 gtactccttccgtttcaaaatacatgtccattttggagaaatt 40349001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 2911601 - 2911560
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  2911601 tactccctccatttcaaaatacatgtccattttggagaaatt 2911560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 25614628 - 25614587
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  25614628 tactccttccgtttcaaaatacatgtccattttggagaaatt 25614587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 27814088 - 27814031
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  27814088 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 27814031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 47110451 - 47110492
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  47110451 tactccctccatttcaaaatacatgtccattttggagaaatt 47110492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 234 - 457
Target Start/End: Original strand, 34222052 - 34222275
Alignment:
Q  234 aaatggtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtcta 333  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  34222052 aaatagtactccttccgttttaaaatacatgtccattttatagaaattttttgtttcaaaatacatgtccatttcataatttaaggatacattttgtcta 34222151  T
Q  334 ttttacccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatg 433  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34222152 ttttacccttgtctatcaattaattgaattttagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatg 34222251  T
Q  434 cactctcccaataaattattttcc 457  Q
    ||||||||||| ||||||||||||    
T  34222252 cactctcccaagaaattattttcc 34222275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 45112226 - 45112021
Alignment:
Q  19 ggaacttactatgaatatatatcaattatgtatataggtaggttgcgttaccgtatcaagaggccaaatattttcccatgagaactgctccataattaga 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45112226 ggaacttactatgaatacatatcaattatgtatataggtaggttgcattaccgtatcaagaggccaaatattttcccatgagaactgctccataattaga 45112127  T
Q  119 aagtgctagatatga--gagactctcgagtcaaatgaggataaatcaagtgataaatactaaacccttcnnnnnnnggaaggttagcaggtgctttcggg 216  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| | |||||||||||||       ||||||||||||||||||||||||    
T  45112126 aagtgctagatatgagagagactctcgagtcaaatgaggataaatcaagtgat-agtactaaacccttc-aaaaaaggaaggttagcaggtgctttcggg 45112029  T
Q  217 cactaatt 224  Q
    ||||||||    
T  45112028 cactaatt 45112021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 1102502 - 1102544
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  1102502 gtactccctccgtttcaaaatacatgtccattttggagaaatt 1102544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 3518908 - 3518949
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  3518908 tactccctccgtttcaaaatacatgtccattttggagaaatt 3518949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 12970016 - 12969975
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12970016 tactccctccgtttcaaaatacatgtccattttggagaaatt 12969975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 34224431 - 34224390
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggagaaatt 34224390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 39938447 - 39938390
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||||| ||||| ||||||||||||||||   |||||||||| |||||    
T  39938447 tactccctccgttttataatacttgtccattttagagaataattttgtttcacaatac 39938390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 23366790 - 23366830
Alignment:
Q  241 actccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaatt 23366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 37674016 - 37673973
Alignment:
Q  238 ggtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||    
T  37674016 ggtactccctccgtttcaaaatacatgttcattttggagaaatt 37673973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 11841583 - 11841621
Alignment:
Q  230 ttttaaatggtactccctccgttttaaaatacatgtcca 268  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  11841583 ttttaaatgttactccctccgtttcaaaatacatgtcca 11841621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 39938169 - 39938211
Alignment:
Q  239 gtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||    
T  39938169 gtactccctccgtttcaaaatacatgaccattttggagaaatt 39938211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 1646564 - 1646507
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataattttgtttcacaatac 1646507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 12969740 - 12969801
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 301  Q
    |||||||||||||| | ||||| |||||||||| |||||   |||||||||| |||||||||    
T  12969740 tactccctccgtttcataatacttgtccattttggagaataattttgtttcacaatacatgt 12969801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 22388138 - 22388195
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  22388138 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 22388195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 23367066 - 23367009
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  23367066 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 23367009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 247 - 451
Target Start/End: Complemental strand, 19362223 - 19362019
Alignment:
Q  247 tccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtc 346  Q
    ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||   ||| |||||||||||||||||||||||||||||||| |||||    
T  19362223 tccgtttcaaaatacatgtccattttagagaaattttttgttgtaaaatacatgtcattttgatagtttaaggatacattttgtctattttaccattgtc 19362124  T
Q  347 taccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaata 446  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  19362123 taccaattaattggattctagatgttctcctcaataattattttacaccagtaaatgttgacccaattttaagtggatttactcatgcactctccctaga 19362024  T
Q  447 aatta 451  Q
    |||||    
T  19362023 aatta 19362019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 247 - 443
Target Start/End: Complemental strand, 20543521 - 20543325
Alignment:
Q  247 tccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtc 346  Q
    |||||||||||||| |||||  ||||  ||||| |||||||||||||||||||||   ||| ||||||||||||||||||||||||||| |||||||| |    
T  20543521 tccgttttaaaataaatgtcgtttttgaagaaagtttttgtttcaaaatacatgtcattttgatagtttaaggatacattttgtctattctacccttgcc 20543422  T
Q  347 taccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctccca 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  20543421 taccaattaattggattctagattttctccataataattattttccattaataaatgttgacccaattttaagtggatttactcatgcactttccca 20543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 34324864 - 34324819
Alignment:
Q  236 atggtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  34324864 atggtactccctccgtttcaaaatacatgtccattttggagaaatt 34324819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 12071556 - 12071602
Alignment:
Q  235 aatggtactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||    
T  12071556 aatgatactccctccgtttcaaaatacatgtccattttggagaaatt 12071602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 14261044 - 14261085
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  14261044 tactccctccgtttcaaaatacatgtccattttggagaaatt 14261085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 21310425 - 21310466
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  21310425 tactccctccgtttcaaaatacatgtccattttggagaaatt 21310466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 24706239 - 24706304
Alignment:
Q  232 ttaaatggtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  24706239 ttaaatgatactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 24706304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 25704651 - 25704692
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  25704651 tactccctccgtttcaaaatacatgtccattttggagaaatt 25704692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40122762 - 40122721
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  40122762 tactccctccgtttcaaaatacatgtccattttggagaaatt 40122721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 44569114 - 44569044
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcat 310  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| ||||| ||| | ||||||    
T  44569114 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcat 44569044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 12071837 - 12071780
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 12071780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 14261321 - 14261264
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  14261321 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 14261264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 21310698 - 21310641
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  21310698 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 21310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 21661812 - 21661771
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  21661812 tactccctccctttcaaaatacatgtccattttggagaaatt 21661771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 21670576 - 21670535
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  21670576 tactccctccctttcaaaatacatgtccattttggagaaatt 21670535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 22321544 - 22321503
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  22321544 tactccttccgtttcaaaatacatgtccattttggagaaatt 22321503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 24706524 - 24706483
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  24706524 tactccatccgtttcaaaatacatgtccattttggagaaatt 24706483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 25704928 - 25704871
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 297  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  25704928 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 25704871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 17610280 - 17610308
Alignment:
Q  240 tactccctccgttttaaaatacatgtcca 268  Q
    |||||||||||||||||||||||||||||    
T  17610280 tactccctccgttttaaaatacatgtcca 17610308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 45730 - 45669
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 301  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||||||    
T  45730 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgt 45669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 45454 - 45495
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  45454 tactccctccgtttcaaaatacatgttcattttggagaaatt 45495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 176 - 135
Alignment:
Q  240 tactccctccgttttaaaatacatgtccattttagagaaatt 281  Q
    ||||| |||||||| |||||||||||||||||| ||||||||    
T  176 tactctctccgtttcaaaatacatgtccattttggagaaatt 135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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