View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4016_low_5 (Length: 452)
Name: NF4016_low_5
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_5 |
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| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 105 - 439
Target Start/End: Complemental strand, 25065454 - 25065117
Alignment:
| Q |
105 |
tttgttgaacctttcaatgtagtctcgaacatgctctct--ttccttggatgatag-tctcaaggtcgcaaccctcttgatttgccttctcgatgtagtg |
201 |
Q |
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|||||||||| |||| |||||||||||||||| |||||| ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
25065454 |
tttgttgaacttttcgatgtagtctcgaacattctctctctttccttggatgatagctttcaaggtcgcaaccttcttggtttgccttctcgatgtagtg |
25065355 |
T |
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| Q |
202 |
aaatgggtagtgaattgtatacgtagttcctcccaagagtcgatggactcttctctcaagcttttgcataatttcaaggctcccattaggcaccgtgaaa |
301 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25065354 |
aaatgggtcgtgaattgtatacatagttcctcccaagagtcgatggactcttctctcaagcttttgcataatttcaaggctcccattaggcaccgtgaaa |
25065255 |
T |
|
| Q |
302 |
agagcctaaatttgaccgctccttgaacgttatgatacttgaggacgacttcaatgttttcaatgtattcatttgcatatgtggttccattgtacggatc |
401 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25065254 |
agagcctaaatttgaccgctcctcgaacgttatgatacttgaggacgacttcaatgttttcaatgtattcatttgcatatgtggttccattttacggatc |
25065155 |
T |
|
| Q |
402 |
catccggctttcctaaacctactcgattgcatgattct |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
25065154 |
catccggctttcctaaacctactcgattgcatgattct |
25065117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 25065573 - 25065491
Alignment:
| Q |
22 |
atcgatgaggtagtcttggctatcttacagctttgaggaaatcggctcctggtcggagacccctattcaactggtacaacttc |
104 |
Q |
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| T |
25065573 |
atcgatgaggtagtcttagctatcttacagctttgaggaaatcggttcctggtcggagacccttattcaattggttcaacttc |
25065491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 38142 - 38108
Alignment:
| Q |
99 |
aacttctttgttgaacctttcaatgtagtctcgaa |
133 |
Q |
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| T |
38142 |
aacttctttgttgaacctttcgatgtagtctcgaa |
38108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 390218 - 390252
Alignment:
| Q |
97 |
acaacttctttgttgaacctttcaatgtagtctcg |
131 |
Q |
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| T |
390218 |
acaacttctttgttgaacctctcaatgtagtctcg |
390252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 29567257 - 29567314
Alignment:
| Q |
97 |
acaacttctttgttgaacctttcaatgtagtctcgaacatgct--ctctttccttgga |
152 |
Q |
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|||||||||||||||||||| || ||||||||||||| | ||| ||||||||||||| |
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| T |
29567257 |
acaacttctttgttgaacctctcgatgtagtctcgaagaggctcactctttccttgga |
29567314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 15412907 - 15412939
Alignment:
| Q |
101 |
cttctttgttgaacctttcaatgtagtctcgaa |
133 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
15412907 |
cttctttgttgaacctttcgatgtagtctcgaa |
15412939 |
T |
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