View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4016_low_8 (Length: 415)
Name: NF4016_low_8
Description: NF4016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4016_low_8 |
 | |
|
| [»] scaffold0136 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 20039862 - 20039466
Alignment:
| Q |
1 |
gaatgagttcatatgttcagtttcatcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaacaagaggtt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20039862 |
gaatgagttcatatgttctgtttaatcatttatttttaataaatttcaaacaagaggt-atatgtatctttgaaagtgaaactacgagaaacaagaggtt |
20039764 |
T |
|
| Q |
101 |
tcaacaagcaagtttttgcactgatttcgctttattcatgggttgttggaattgaatgttgatttttcctttgatttttattatgatttatggaggatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20039763 |
tcaacaagcaagtttttgcactgatttcgctttattcatgagttgttggaattgaatgttgatttttcctttgatttttattatgatttatggaggatgc |
20039664 |
T |
|
| Q |
201 |
taaattattaaatttgggtaaacccatgagttatcctttgctagctggtttggccaaattattcagttgagaaattaagaaccttacctcctttcagttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
20039663 |
taaattattaaatttgggtaaacccatgagttattctttgctagctggtttggccaaatttttcagttgagaaattaagaaccttacctcatctcagttg |
20039564 |
T |
|
| Q |
301 |
agacatattgacctttttgttgtttcttgtgataagtaggacactcagacatgagatgaccatatccatcacagccaaaacactgtaaacctctccct |
398 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20039563 |
agacatattgacctttttattgtttcttgagataagtaggacactcggagttgagatgaccatatccatcacagccaaaacattgtaaacctctccct |
20039466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 41134284 - 41134130
Alignment:
| Q |
33 |
tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaacaagaggtttcaacaagcaagtttttgcactgatttcgctt |
132 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
41134284 |
tttttaatgaatttcaaacaagaggttatctgtgtctttgaaagtgaaactacaagaaacaaga-gtttcaacaa--aagtttttgcactgattttgctt |
41134188 |
T |
|
| Q |
133 |
t-attcatgggttgttggaattgaatgttgatttttcctttgatttttattatgattt |
189 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41134187 |
tgattcatgggttgctggaattgaatgttgatttttcctttgatttttatcatgattt |
41134130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 39087099 - 39087021
Alignment:
| Q |
89 |
aaacaagaggtttcaacaagcaagtttttgcactgatttcgcttt-attcatgggttgttggaattgaatgttgattttt |
167 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
39087099 |
aaacaagaggtttcaacaagcaagtatttgcagtgatttcgttttgattcatgggttg-tggaattgaatgttgattttt |
39087021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39087146 - 39087088
Alignment:
| Q |
1 |
gaatgagttcatatgttcagtttcatcatttctttttaataaatttcaaacaagaggtt |
59 |
Q |
| |
|
||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
39087146 |
gaatgggttcatatgtttggtttaatcattcatttttaataaatttcaaacaagaggtt |
39087088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 40820100 - 40820035
Alignment:
| Q |
25 |
atcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaa |
91 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| |||||||||| |
|
|
| T |
40820100 |
atcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaagctacgagaaa |
40820035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 21834 - 21771
Alignment:
| Q |
16 |
ttcagtttcatcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaa |
80 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
21834 |
ttcagtttaatcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaa |
21771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 35885832 - 35885780
Alignment:
| Q |
33 |
tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactac |
85 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
35885832 |
tttttaattaatttcaaacaagaggttatgtgcatctttaaaagtgaaactac |
35885780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 24472327 - 24472275
Alignment:
| Q |
33 |
tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactac |
85 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
24472327 |
tttttaattaatttcaaacaagaggttatgtgcatctttaaaagtgaaactac |
24472275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 3336970 - 3337044
Alignment:
| Q |
16 |
ttcagtttcatcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaa |
91 |
Q |
| |
|
|||| ||| |||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| |||| ||||| |
|
|
| T |
3336970 |
ttcaatttaatcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaagctacaagaaa |
3337044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University