View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-1 (Length: 1100)

Name: NF4017-Insertion-1
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-1
NF4017-Insertion-1
[»] chr6 (14 HSPs)
chr6 (343-1045)||(28153763-28154467)
chr6 (113-341)||(28246027-28246255)
chr6 (113-341)||(28328269-28328497)
chr6 (113-341)||(28505905-28506133)
chr6 (7-130)||(28154464-28154587)
chr6 (113-339)||(28239048-28239274)
chr6 (113-341)||(28524905-28525133)
chr6 (113-275)||(28191138-28191300)
chr6 (87-157)||(28192456-28192525)
chr6 (137-296)||(28142352-28142511)
chr6 (512-602)||(28178237-28178327)
chr6 (528-602)||(28224299-28224373)
chr6 (230-301)||(28095794-28095865)
chr6 (514-561)||(29828483-29828530)
[»] scaffold0038 (3 HSPs)
scaffold0038 (113-341)||(46189-46417)
scaffold0038 (113-339)||(39210-39436)
scaffold0038 (528-602)||(24797-24871)
[»] scaffold0019 (2 HSPs)
scaffold0019 (113-323)||(55513-55723)
scaffold0019 (726-804)||(56151-56229)
[»] chr5 (1 HSPs)
chr5 (137-281)||(16693892-16694036)
[»] chr4 (1 HSPs)
chr4 (130-261)||(5088325-5088456)
[»] chr2 (1 HSPs)
chr2 (230-301)||(3282422-3282493)
[»] chr8 (1 HSPs)
chr8 (218-293)||(16352164-16352239)


Alignment Details
Target: chr6 (Bit Score: 607; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 343 - 1045
Target Start/End: Complemental strand, 28154467 - 28153763
Alignment:
Q  343 tttgagcagaagttgtcgtacatttgtagacaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 442  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154467 tttgagccgaagttgtcgtacatttgtagtcaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 28154368  T
Q  443 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154367 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 28154268  T
Q  543 cttctattgaagttcccaccaaagcaagtgatgagatattttccatctctcctaatatttgagactagaacaacatgagagatccagttgataaagaaaa 642  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154267 cttctattgaagttcccaccaaaacaagtgataagatattttccatctctcctaatatttgagactagaacaacatgagagatccagttgataaagaaaa 28154168  T
Q  643 gttaacttcatcggttggaaactcctaagcttgcagcaaccttcagcaattaggacttgaagtttatttaggcaaatagaatggtgaattgtaattaaat 742  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28154167 gttaacttcatcggttggaaactcctaagcttgcagcaaccttcagcaactaggacttgaagtttatttaggcaaacagaatggtgaattgtaattaaat 28154068  T
Q  743 ttatacattttttaattgaaaatatttctaaattttggagaccagatatgtcgagtatccgttttagacttccac-gtagtctaaatttaactctttcat 841  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28154067 ttatacattttttaattgaaaatatttctaaatttcggagaccagatatgtcaagtatccgttttagacttccacagtagtctaaatttaactctttcat 28153968  T
Q  842 atctatgaacctctgcaaaaaggnnnnnnnnntgaataacctaaaagcgacgcattgacatacaagatgatacaaacagaactattactcaaaccttcaa 941  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28153967 atctatgaacctctgcaaaaagg-aaaaaaaatgaataacctaaaagcgacgcattgacatacaagatgatataaacagaactattactcaaaccttcaa 28153869  T
Q  942 tgaggaaggtgactcaaatgatttaagcaaacttcctgtgaaggatatctgtgccattctagaaatctcaaattatttg--agatgtccgggacctttgg 1039  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||    
T  28153868 tgaggaaggtgactcaaatgatttaagcaaacttcatgtgaaggatatctatgccattctagaaatctcaaattatttggaagatgtccgggatctttgg 28153769  T
Q  1040 gaaaga 1045  Q
    ||||||    
T  28153768 gaaaga 28153763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 28246255 - 28246027
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28246255 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 28246156  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  28246155 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 28246056  T
Q  313 tgcaagaaattcttatgacaagctgcatt 341  Q
    || ||||||||| | ||||||| ||||||    
T  28246055 tggaagaaattcatctgacaagttgcatt 28246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 28328497 - 28328269
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28328497 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28328398  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28328397 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28328298  T
Q  313 tgcaagaaattcttatgacaagctgcatt 341  Q
    || ||||||||| | ||||||| ||||||    
T  28328297 tggaagaaattcatctgacaagttgcatt 28328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 28506133 - 28505905
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28506133 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28506034  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28506033 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28505934  T
Q  313 tgcaagaaattcttatgacaagctgcatt 341  Q
    || ||||||||| | ||||||| ||||||    
T  28505933 tggaagaaattcatctgacaagttgcatt 28505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 28154587 - 28154464
Alignment:
Q  7 aaataatttataagattaccaacataaattacaatatgctatgaaatgtaaaatgaaatttttaagcaagnnnnnnnnnncttatttagtagcattctcc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          ||||||||||||||||||||    
T  28154587 aaataatttataagattaccaacataaattacaatatgctatgaaatgtaaaatgaaatttttaagcatgaaaataaaaacttatttagtagcattctcc 28154488  T
Q  107 tgcaaagaggaagtcaatgatttg 130  Q
    ||||||||||||||||||||||||    
T  28154487 tgcaaagaggaagtcaatgatttg 28154464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 113 - 339
Target Start/End: Complemental strand, 28239274 - 28239048
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  28239274 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 28239175  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  28239174 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 28239075  T
Q  313 tgcaagaaattcttatgacaagctgca 339  Q
    || ||||||||| | ||||||| ||||    
T  28239074 tggaagaaattcatctgacaagatgca 28239048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 28525133 - 28524905
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    ||||||||||| ||||||||||||| ||||||||| | |  ||||||||| || | |||||||||||||| ||| || ||||| ||||||||   |||      
T  28525133 gaggaagtcaaggatttgcagcctattgcagacaagtatgctaaatttggcggcatccctctaatttctctaaggcacttgcaatcatccaatataagag 28525034  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
       ||||||| ||| | ||||||||||||||||||||||| ||||||||| | | |||||||| |||   || |||||||| | ||||||||| ||| ||    
T  28525033 catataaaaactgaaaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaatattttcacattagcagaccacatgacaagtat 28524934  T
Q  313 tgcaagaaattcttatgacaagctgcatt 341  Q
    || |||||| || | ||||||| ||||||    
T  28524933 tggaagaaaatcatctgacaagttgcatt 28524905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 113 - 275
Target Start/End: Complemental strand, 28191300 - 28191138
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||||||||||||||||||  |  ||||||||| | | |||||||| |||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28191300 gaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctctaatttctctaaggcacttgcaatcatccaatataagat 28191201  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggt 275  Q
     | |||||| |||||| ||||||||||||||||||||||| ||||||||| | | ||||||||    
T  28191200 ccgataaaaggtgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggt 28191138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 28192456 - 28192525
Alignment:
Q  87 cttatttagtagcattctcctgcaaagaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaa 157  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  28192456 cttatttagtagcatgctcctgcaa-gaggaagtcaatgatttgcaatttaatgcagacaaatgttttaaa 28192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 296
Target Start/End: Complemental strand, 28142511 - 28142352
Alignment:
Q  137 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacagtctttga 236  Q
    |||||||||| ||||||||||||||| |||| ||| ||||||||| ||||| | || || | |||||| | ||| | |  ||||||||  || |||||||    
T  28142511 aatgcagacacatgttttaaatttggcggaatccccctaatttcttgaagagacttacaattatccaattcaaggctctgtaaaaagttgcattctttga 28142412  T
Q  237 tgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaa 296  Q
     |||||| ||||| || || |||||||||| |||||||  ||||| || |||||||||||    
T  28142411 ggcattccggaaggattgtaaaattactccctgataggactaaatctttcacattagtaa 28142352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 512 - 602
Target Start/End: Complemental strand, 28178327 - 28178237
Alignment:
Q  512 ccagtgagatttcgaaatgaaaatggcaactcttctattgaagttcccaccaaagcaagtgatgagatattttccatctctcctaatattt 602  Q
    ||||||| ||||  ||||||||||  |||||||||||| ||||||||||||| | ||| |||||| ||||||||||| |||||||| ||||    
T  28178327 ccagtgatatttttaaatgaaaatcacaactcttctatggaagttcccaccagaacaactgatgatatattttccatgtctcctaacattt 28178237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 28224373 - 28224299
Alignment:
Q  528 atgaaaatggcaactcttctattgaagttcccaccaaagcaagtgatgagatattttccatctctcctaatattt 602  Q
    ||||||||| |||||||||||| ||||||||||||| |  || |||||| |||||||||||||||||||| ||||    
T  28224373 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 28224299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 28095794 - 28095865
Alignment:
Q  230 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 301  Q
    |||||||||||||| |||||||| |||| ||||||  |||||| |||||||| |  |||||||| |||||||    
T  28095794 tctttgatgcattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccac 28095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 29828530 - 29828483
Alignment:
Q  514 agtgagatttcgaaatgaaaatggcaactcttctattgaagttcccac 561  Q
    |||||||||| |||||||||||||||| |||| ||| |||||||||||    
T  29828530 agtgagattttgaaatgaaaatggcaattcttttatggaagttcccac 29828483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 93; Significance: 1e-44; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 46417 - 46189
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  46417 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 46318  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  46317 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 46218  T
Q  313 tgcaagaaattcttatgacaagctgcatt 341  Q
    || ||||||||| | ||||||| ||||||    
T  46217 tggaagaaattcatctgacaagttgcatt 46189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 113 - 339
Target Start/End: Complemental strand, 39436 - 39210
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  39436 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 39337  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  39336 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 39237  T
Q  313 tgcaagaaattcttatgacaagctgca 339  Q
    || ||||||||| | ||||||| ||||    
T  39236 tggaagaaattcatctgacaagatgca 39210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 24871 - 24797
Alignment:
Q  528 atgaaaatggcaactcttctattgaagttcccaccaaagcaagtgatgagatattttccatctctcctaatattt 602  Q
    ||||||||| |||||||||||| ||||||||||||| |  || |||||| |||||||||||||||||||| ||||    
T  24871 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 24797  T

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Target: scaffold0019 (Bit Score: 87; Significance: 4e-41; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 113 - 323
Target Start/End: Original strand, 55513 - 55723
Alignment:
Q  113 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 212  Q
    |||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||| || ||||| |||||||| | |||      
T  55513 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatttaagaa 55612  T
Q  213 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 312  Q
     ||| |||||| |||| ||||| |||||||| |||||||| ||||||||| | | |||||||| ||||  || |||||||| | ||||||||| ||| ||    
T  55613 accacaaaaagcgacaatctttcatgcattccggaagaattgtgaaattatttcctgataggtctaaagttttcacattagcagaccacatgacaagtat 55712  T
Q  313 tgcaagaaatt 323  Q
    || ||||||||    
T  55713 tggaagaaatt 55723  T

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Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 726 - 804
Target Start/End: Original strand, 56151 - 56229
Alignment:
Q  726 gtgaattgtaattaaatttatacattttttaattgaaaatatttctaaattttggagaccagatatgtcgagtatccgt 804  Q
    |||||||  |||||||||  |||| ||||||| ||||||||||||||||||| ||||| | || |||||  ||||||||    
T  56151 gtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtatccgt 56229  T

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Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 137 - 281
Target Start/End: Complemental strand, 16694036 - 16693892
Alignment:
Q  137 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccat-aaaaagtgacagtctttg 235  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| |||| ||||| ||| ||  || |||||||| || ||||||    
T  16694036 aatgcagacaaacgttttaaatttggaggaatccctctaatttctcgaagacatgtgcagtcattcaaattaag-cgtaatcaaaaagtggcattctttg 16693938  T
Q  236 atgcattctggaagaatagtgaaattactccttgataggtttaaat 281  Q
    ||  |||||||||| || |||||| || |||| ||||||| |||||    
T  16693937 ataaattctggaagtattgtgaaactattcctcgataggtctaaat 16693892  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 5088325 - 5088456
Alignment:
Q  130 gcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacag 229  Q
    ||||| |||||||||||  |  |||| | |||| |||| ||||||||||||| ||||| | ||||| |||| ||| ||||| | ||||| |||| ||||     
T  5088325 gcagcgtaatgcagacatgttctttagagttggaggaatccctctaatttcttgaagagacttgcattcattcaattgaaggctccatagaaagcgacat 5088424  T
Q  230 tctttgatgcattctggaagaatagtgaaatt 261  Q
    ||||||| |||||||||||||||  |||||||    
T  5088425 tctttgaggcattctggaagaattttgaaatt 5088456  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 3282493 - 3282422
Alignment:
Q  230 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 301  Q
    |||| |||||||||||||||||| ||||||||| || |||||| || |||||||  ||||||||||||||||    
T  3282493 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccac 3282422  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 16352164 - 16352239
Alignment:
Q  218 aaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattag 293  Q
    |||||||||||||||||||| ||| |  ||||| | ||||||||| || | ||||||||||||| || ||||||||    
T  16352164 aaaaagtgacagtctttgatccatgcatgaagagttgtgaaattattcttcgataggtttaaatctttcacattag 16352239  T

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