View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-10 (Length: 514)

Name: NF4017-Insertion-10
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-10
NF4017-Insertion-10
[»] chr3 (1 HSPs)
chr3 (7-514)||(9171744-9172254)
[»] chr1 (14 HSPs)
chr1 (115-514)||(9256982-9257375)
chr1 (28-501)||(9466114-9466587)
chr1 (32-514)||(9300335-9300820)
chr1 (246-503)||(8962556-8962814)
chr1 (28-514)||(9364638-9365124)
chr1 (246-514)||(8939618-8939887)
chr1 (130-503)||(8927203-8927579)
chr1 (35-503)||(9337790-9338255)
chr1 (164-476)||(9242056-9242368)
chr1 (404-501)||(9236164-9236261)
chr1 (32-141)||(9238409-9238518)
chr1 (404-514)||(9377959-9378069)
chr1 (402-503)||(9125133-9125234)
chr1 (402-474)||(8978955-8979027)
[»] chr6 (1 HSPs)
chr6 (248-483)||(15909995-15910228)
[»] scaffold0690 (1 HSPs)
scaffold0690 (363-483)||(1878-1999)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 514
Target Start/End: Complemental strand, 9172254 - 9171744
Alignment:
Q  7 aatttatttatacaatcaaactatttaatctatttcttgaatcacttcaaggtgcaaattcataggtggtg---caacaatactagtagttgtattagat 103  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||   |||||||| |||||||||||||||||    
T  9172254 aatttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattcataggtggtggtgcaacaatattagtagttgtattagat 9172155  T
Q  104 gaagttgtaggtccaaaagggttgcagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggtt 203  Q
    ||||||||||||||| |||||||  | ||||||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  9172154 gaagttgtaggtccataagggtttgaaggaacttgtaacttgtctccatctccttgcagcatttgcatcacagttttcatagacggacgatgcataggtt 9172055  T
Q  204 gccattggatgcaccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaa 303  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||| | ||| ||||||||| |||||||||| |    
T  9172054 gccattggatgcaccaaagtcccacgattgccaatttttt-cgcaattctaaaatctccctcatcatctattgggatttgtatttctcctccttcaagca 9171956  T
Q  304 aaccgtgaatccaatctcgatatagaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaatt-ccaatagcaatatatc 402  Q
    ||| ||| ||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |    
T  9171955 aactgtggatccaatctggatacagaacttgaaaattttcttcatttgtggttgtgtttgtattctttcttcctccaacaatttccaatagcaacatacc 9171856  T
Q  403 atagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagat 502  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  9171855 atagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgat 9171756  T
Q  503 atggtactttga 514  Q
    || |||||||||    
T  9171755 atagtactttga 9171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 115 - 514
Target Start/End: Original strand, 9256982 - 9257375
Alignment:
Q  115 tccaaaagggttgcagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatg 214  Q
    ||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||| |||||||||||  | ||||||||||          |||    
T  9256982 tccaaaagggttgcaggaaacttttaagttgtctccatctcctttcagcatttgcatcacatctttcatagaccgatgatgcatagg----------atg 9257071  T
Q  215 caccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatc 314  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||    
T  9257072 caccaaagtcccacgattgccaatttttt-cgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctcctttaagcaaaccgtggatc 9257170  T
Q  315 caatctcgatatagaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaa-ttccaatagcaatatatcatagctatata 413  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  9257171 caatctggatatagaacttgaaagttttcttcatttgtggttggatttgtattctttcttcctccaacaatttccaatagcaatataccatagctatata 9257270  T
Q  414 tatcagactta----taagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtac 509  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  9257271 tatcagacttataattaagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgcagtcatagatatagtac 9257370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 28 - 501
Target Start/End: Original strand, 9466114 - 9466587
Alignment:
Q  28 tatttaatctatttcttgaatcacttcaaggtgcaaattcataggtggtgcaacaatactagtagttgtattagatgaagttgtaggtccaaaagggttg 127  Q
    ||||||||||| ||||||||| ||||| || |  ||||| ||| |   || |||| |||||| ||||| ||||| |||||||||||| |||||||| |||    
T  9466114 tatttaatctaattcttgaataacttctagctcgaaatttatacgctttgtaacagtactagcagttgaattagttgaagttgtaggcccaaaaggattg 9466213  T
Q  128 cagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtccca 227  Q
    | ||| |||||||| ||||||||||| | ||| | |||||| ||||||| |||||| || | |||||||||||||||||| |||||||||| |||||| |    
T  9466214 ctggggacttttaacttgtctccatcaccttgtagcatttgtatcacagttttcatggatggacgatgcataggttgccactggatgcaccgaagtccaa 9466313  T
Q  228 cgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatata 327  Q
    | || ||||         | ||| || |||||||||||||| || |||| ||| ||||| ||| | |||||||| ||| |||| ||||||||| ||||||    
T  9466314 caatcgccattttttttgg-aatcctgaaatctccctcttcgtcaatagggatttgtatgtctcccccttcaagcaaatcgtggatccaatctggatata 9466412  T
Q  328 gaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttata 426  Q
    ||||||| || |||||||||  |||||||| ||||||||||||||||||| |||| || ||||| | ||| ||| |||| ||||||||||||||||||||    
T  9466413 gaacttgtaaattttcttcacctgtggttgtgtttgtattctttcttcctgcaaccatctccaacaacaacataccataactatatatatcagacttata 9466512  T
Q  427 agagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcataga 501  Q
     |||||||| || |||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||    
T  9466513 tgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacgttcctttggctgcggtcataga 9466587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 32 - 514
Target Start/End: Complemental strand, 9300820 - 9300335
Alignment:
Q  32 taatctatttcttgaatcacttcaaggtgcaaattcataggtggtgcaacaatactagtagttgtattagatgaagttgtaggtccaaaagggttgcagg 131  Q
    |||||||  |||| ||||||||| || | |||| ||||||||  || ||| ||||||| ||||||||| |  ||||| |  || |||||||| ||||  |    
T  9300820 taatctaactctttaatcacttccagctccaaactcataggttttgaaacgatactagcagttgtattggtggaagtcgatggcccaaaaggattgcgtg 9300721  T
Q  132 gaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgat 231  Q
    |||||||||  |||||||| |||| ||| | |||||||| ||||| |||||| |||| |||||||||||||||||| || |||||||| | |||||| ||    
T  9300720 gaacttttagcttgtctccctctccttgtaacatttgcaacacagttttcatggacggacgatgcataggttgccactgaatgcaccataatcccacaat 9300621  T
Q  232 tgccaannnnnnncgcaattctaaaatctccct---cttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatag 328  Q
    |||||         |||||||| |||||  |||   |||||||||||| ||| ||||| ||| |||||||||  |||| ||| ||||||||| ||||||     
T  9300620 tgccatttttttt-gcaattctgaaatcatcctgttcttcatctatagggatttgtatgtctcctccttcaactaaactgtggatccaatctggatataa 9300522  T
Q  329 aacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataa 427  Q
    ||||||     || ||||| ||||||||| ||| | |||||| ||||| ||||| || ||||  | ||| ||  |||| ||||||||||| |||||||||    
T  9300521 aacttgtggacttccttcacttgtggttgtgttcgaattcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataa 9300422  T
Q  428 gagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttga 514  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||| |||||||||    
T  9300421 gagacattcccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctttggccgcggtcatagatatagtactttga 9300335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 246 - 503
Target Start/End: Complemental strand, 8962814 - 8962556
Alignment:
Q  246 gcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttctt 345  Q
    ||||||||| ||||||| |||||||| |||| ||||||||| ||| | |||||||  |||||||| ||||||||| |||| | ||||||||| |||||||    
T  8962814 gcaattctataatctccatcttcatcaatagggatatgtatatctcccccttcaaacaaaccgtggatccaatctggatacaaaacttgaaaattttctt 8962715  T
Q  346 catttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtt 444  Q
    ||| ||||  ||  || ||||||||||||||||| || || ||||  ||||| ||  ||||||| ||||||||||| |||||||||||||| ||||||||    
T  8962714 catctgtgactgtcttagtattctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtt 8962615  T
Q  445 tctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagata 503  Q
    || |||||| ||||| |||||||||||||||||| |||| || || |||||||| ||||    
T  8962614 tcgagaaaatacttcaggtgccatgtatcctaatgttcccctagccgcagtcatcgata 8962556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 514
Target Start/End: Complemental strand, 9365124 - 9364638
Alignment:
Q  28 tatttaatctatttcttgaatcacttcaaggtgcaaattcataggtggtgcaacaatactagtagttgtattagatgaagttgtaggtccaaaagggttg 127  Q
    |||||| |||| ||||| |||||| || || | |||||||||| ||  |||||||||| ||| | ||||||||| || |||||| ||||| || || ||     
T  9365124 tatttattctaattcttcaatcacctccagctccaaattcatacgttctgcaacaatattagcatttgtattagttgtagttgttggtccgaacggatta 9365025  T
Q  128 cagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtccca 227  Q
       || |||||||| ||||| || |||| ||| | |||||| ||||||  |||||| | || ||| |||| ||| ||||||||||| ||||| |||||||    
T  9365024 gtaggcacttttaacttgtccccctctccttgaagcatttgtatcacatatttcattgtcggacggtgcaaagggtgccattggatacaccatagtccca 9364925  T
Q  228 cgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatata 327  Q
    |  |||||||        | |||||||||||||||||||||||| |||| ||||||||| ||| |||||||||| |||  ||| ||||| ||| ||||      
T  9364924 cagttgccaatttttttgg-aattctaaaatctccctcttcatcaatagggatatgtatatctcctccttcaagcaaattgtggatccagtctggatact 9364826  T
Q  328 gaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaatt-ccaatagcaatatatcatagctatatatatcagacttata 426  Q
     |||||| |  ||||||||     |  |||  ||||||||||||||||||||||| ||| |||| |  || ||| | || || |||||||||||||||||    
T  9364825 caacttgtatattttcttcgccactaattgtttttgtattctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttata 9364726  T
Q  427 agagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttga 514  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||  | ||||||||||| |||| | ||||||||    
T  9364725 agagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgatactttga 9364638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 246 - 514
Target Start/End: Complemental strand, 8939887 - 8939618
Alignment:
Q  246 gcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttctt 345  Q
    |||||||||||||||||||||||||| || | ||||| ||  ||| | |||||||  ||||| || ||||||||| |||| |  |||||||| |||||||    
T  8939887 gcaattctaaaatctccctcttcatcaattgggatatatacgtctccaccttcaaataaaccatggatccaatctggatacaatacttgaaaattttctt 8939788  T
Q  346 catttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtt 444  Q
    ||  ||||  ||  || |||||||||||||||||||| || ||||  ||||| ||| | ||||| |||||||||||||||||||||||||| ||||||||    
T  8939787 cacctgtgactgtcttagtattctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtt 8939688  T
Q  445 tctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttga 514  Q
    || |||||||||||| ||||||||||| |||||  |||| |||||||| ||||| ||||  |||||||||    
T  8939687 tcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcattgatactgtactttga 8939618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 130 - 503
Target Start/End: Complemental strand, 8927579 - 8927203
Alignment:
Q  130 gggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacg 229  Q
    |||||||||||| |||||||| |||| ||| | ||| |||| ||||| |||||| ||||  |||||||  |  ||||| || |||||||||||||| ||     
T  8927579 gggaacttttaatttgtctccctctccttgaagcatctgcaccacagttttcatggacggccgatgcacggagtgccactgaatgcaccaaagtccgaca 8927480  T
Q  230 attgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatataga 329  Q
    ||||| |         ||||||||| |||||||||||||||| || | ||||| ||  ||| | |||||||| ||||| || ||||||||| |||| |||    
T  8927479 attgctagttttttt-gcaattctacaatctccctcttcatcaattgggatatatacgtctccaccttcaagtaaaccatggatccaatctggatacaga 8927381  T
Q  330 acttgaaagttttcttc---atttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttat 425  Q
    ||||| || ||||||||   |   || ||||  || |||||||||||||||||||| || || |  | ||| ||| | ||||| ||||||||||||||||    
T  8927380 acttggaaattttcttcgccaccagtagttgttttagtattctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttat 8927281  T
Q  426 aagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagata 503  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||| |||||| |||| |||||||||||||| ||||    
T  8927280 aagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaacctaatgttcccctggctgcagtcatcgata 8927203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 35 - 503
Target Start/End: Complemental strand, 9338255 - 9337790
Alignment:
Q  35 tctatttcttgaatcacttcaaggtgcaaattcataggtggtgcaacaatactagtagttgtattagatgaagttgtaggtccaaaagggttgcagggaa 134  Q
    |||| ||||| |||||| || || | |||||||||| ||  |||||||||| ||  | || |||||| || |||||| |||||||| || ||    || |    
T  9338255 tctaattcttcaatcacctccagctccaaattcatacgttctgcaacaatattaacatttttattagttgtagttgttggtccaaacggattagtaggca 9338156  T
Q  135 cttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattgc 234  Q
    ||||||| ||||| || |||| ||| | |||||||||||||| |||||| | || |||||||| ||| ||||||||||| ||||| ||||||||  ||||    
T  9338155 cttttaacttgtccccctctccttggagcatttgcatcacagatttcattgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttgc 9338056  T
Q  235 caannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttg 334  Q
    |||        | ||||||||||||||| |||||||| |||| ||| ||||| |||   |||||||| |||  ||| ||||| ||| ||||   ||||||    
T  9338055 caatttttttgg-aattctaaaatctccgtcttcatcaatagggatttgtatctct---ccttcaagcaaattgtggatccagtctggatactcaacttg 9337960  T
Q  335 aaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaatt-ccaatagcaatatatcatagctatatatatcagacttataagagaca 433  Q
     |  ||||||||     |  |||  ||||||||||||||||||||||| ||| |||| |  || ||| | || || ||||||||||||||||||||||||    
T  9337959 tatattttcttcgccactaattgtttttgtattctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagaca 9337860  T
Q  434 ttaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagata 503  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||  | ||||||||||| ||||    
T  9337859 ttaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggata 9337790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 164 - 476
Target Start/End: Original strand, 9242056 - 9242368
Alignment:
Q  164 atttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccc 263  Q
    ||||| ||||||  |||||| | || |||||||| ||| ||||||||||| ||||| ||||||||  |||||||        | ||||||||||||||||    
T  9242056 atttgtatcacaaatttcattgccggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaatttttttgg-aattctaaaatctccc 9242154  T
Q  264 tcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttcatttgtggttgggtttg 363  Q
    |||||||| |||| ||| ||||| ||| |||||||||| |||  ||| ||||| ||| ||||   || ||| |  |||||||||      ||||  ||||    
T  9242155 tcttcatcaatagggatttgtatatctcctccttcaagcaaattgtggatccagtctggatactcaatttgtatattttcttcaccacctgttgtttttg 9242254  T
Q  364 tattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcggg 462  Q
    ||||||||||||||||||| || ||||| |  || ||| | || || |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||    
T  9242255 tattctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcagg 9242354  T
Q  463 tgccatgtatccta 476  Q
    ||||||||| ||||    
T  9242355 tgccatgtagccta 9242368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 501
Target Start/End: Original strand, 9236164 - 9236261
Alignment:
Q  404 tagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcataga 501  Q
    |||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| ||||| |||||||| ||  ||||||| ||||||||||||||    
T  9236164 tagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgcagtcataga 9236261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 9238518 - 9238409
Alignment:
Q  32 taatctatttcttgaatcacttcaaggtgcaaattcataggtggtgcaacaatactagtagttgtattagatgaagttgtaggtccaaaagggttgcagg 131  Q
    |||||||||||||||||| |||| || | |||||||| | ||  ||||||| || |||||||| |||| | ||||| ||||| ||||||||||||| |||    
T  9238518 taatctatttcttgaatcgcttccagctccaaattcaaacgttctgcaacattaatagtagttttatttgctgaagctgtagatccaaaagggttggagg 9238419  T
Q  132 gaacttttaa 141  Q
    ||||||||||    
T  9238418 gaacttttaa 9238409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 9378069 - 9377959
Alignment:
Q  404 tagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagata 503  Q
    |||||||| ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||| |    
T  9378069 tagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctagctgcggttatagaca 9377970  T
Q  504 tggtactttga 514  Q
      |||||||||    
T  9377969 ccgtactttga 9377959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 503
Target Start/End: Original strand, 9125133 - 9125234
Alignment:
Q  402 catagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcataga 501  Q
    |||| ||||| ||||||||||||  ||| ||||| ||||| ||||  || |||||||| |||||||| ||||| ||  ||||||| || |||||||| ||    
T  9125133 cataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatgga 9125232  T
Q  502 ta 503  Q
    ||    
T  9125233 ta 9125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 8978955 - 8979027
Alignment:
Q  402 catagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcc 474  Q
    |||||||||| |||||||| |||  ||| ||||||||||| ||||| || | |||||| |||||||| |||||    
T  8978955 catagctataaatatcagatttaagagacacattaccaaaatttcttgacagaacttcaggtgccatatatcc 8979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 248 - 483
Target Start/End: Original strand, 15909995 - 15910228
Alignment:
Q  248 aattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttca 347  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||   |||||||  |||  ||| ||||| ||| ||||   |||||| | |||||| |||    
T  15909995 aattctaaaatctccctcttcatcaatagggatttgtatatct---ccttcaaacaaattgtggatccagtctggatactcaacttgtatgttttcatca 15910091  T
Q  348 tttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttc 446  Q
        | ||||  ||||||||||||||||||||||| || ||||| |  || ||| | || || |||||||| ||||||||||||||||| ||||| ||||    
T  15910092 ccacttgttgtttttgtattctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttc 15910191  T
Q  447 tagaaaaaacttcgggtgccatgtatcctaattttcc 483  Q
    ||||||||||||| ||||||||||| |||||| ||||    
T  15910192 tagaaaaaacttcaggtgccatgtagcctaatgttcc 15910228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 363 - 483
Target Start/End: Complemental strand, 1999 - 1878
Alignment:
Q  363 gtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgg 461  Q
    |||||||||||||||||||| || ||||| |  || ||| | || || |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |    
T  1999 gtattctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcag 1900  T
Q  462 gtgccatgtatcctaattttcc 483  Q
    |||||||||| |||||| ||||    
T  1899 gtgccatgtagcctaatgttcc 1878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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