View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-11 (Length: 486)

Name: NF4017-Insertion-11
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-11
NF4017-Insertion-11
[»] chr5 (13 HSPs)
chr5 (91-354)||(20539324-20539585)
chr5 (355-486)||(20539610-20539742)
chr5 (7-91)||(20535948-20536032)
chr5 (279-337)||(11449182-11449240)
chr5 (234-282)||(11449271-11449319)
chr5 (355-436)||(11449045-11449128)
chr5 (156-214)||(20538068-20538127)
chr5 (133-214)||(8521270-8521351)
chr5 (133-214)||(8523766-8523847)
chr5 (133-193)||(32759068-32759128)
chr5 (156-207)||(1009206-1009257)
chr5 (133-214)||(1010384-1010465)
chr5 (134-203)||(32757851-32757920)
[»] chr6 (2 HSPs)
chr6 (244-337)||(10459618-10459708)
chr6 (362-415)||(10459797-10459851)
[»] chr1 (6 HSPs)
chr1 (133-207)||(42244653-42244727)
chr1 (128-207)||(46318632-46318711)
chr1 (138-212)||(42245912-42245986)
chr1 (146-207)||(46467168-46467229)
chr1 (142-207)||(46468748-46468813)
chr1 (156-214)||(15746809-15746867)
[»] chr8 (4 HSPs)
chr8 (135-214)||(17702297-17702376)
chr8 (146-205)||(14840932-14840991)
chr8 (147-212)||(45437516-45437581)
chr8 (142-214)||(38696323-38696395)
[»] chr2 (5 HSPs)
chr2 (156-214)||(34513596-34513654)
chr2 (145-207)||(35903530-35903592)
chr2 (156-214)||(37956964-37957022)
chr2 (133-193)||(34148380-34148440)
chr2 (156-214)||(7753569-7753626)
[»] chr4 (3 HSPs)
chr4 (133-212)||(53435773-53435852)
chr4 (142-212)||(53432079-53432149)
chr4 (135-207)||(2162631-2162703)
[»] chr3 (1 HSPs)
chr3 (128-207)||(24403261-24403340)
[»] chr7 (3 HSPs)
chr7 (156-214)||(27769-27827)
chr7 (165-214)||(45455424-45455473)
chr7 (156-212)||(38539688-38539744)
[»] scaffold2071 (1 HSPs)
scaffold2071 (142-207)||(710-775)
[»] scaffold0011 (1 HSPs)
scaffold0011 (146-214)||(127448-127516)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 91 - 354
Target Start/End: Original strand, 20539324 - 20539585
Alignment:
Q  91 atatttggtgttaaacttaacggacacggannnnnnngacatacggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatga 190  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||    
T  20539324 atatttggtgttaaacttaacggacacggatttttttgacatacggagatgaacttgagtgaccgaaacatgacttt-attaataatgggaccaaaatga 20539422  T
Q  191 aaatttgaaattaattatgggaccnnnnnnncctattaaacctaaggttaaagagttgactcctcctactaacataattcactattatttttcttggttg 290  Q
    |||||| |||||||||| ||||||       | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20539423 aaatttaaaattaattaggggaccaaaaaatc-tattaagcctaacgttaaagagttgactcctcctactaacataattcactattatttttcttggttg 20539521  T
Q  291 aattaatattgctcactattaatatttattgttaaatttgaaatattctagcagcggtttgcac 354  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20539522 aattaataatgctcactattaatatttattgttaaatttgaaatattctagcagcggtgtgcac 20539585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 355 - 486
Target Start/End: Original strand, 20539610 - 20539742
Alignment:
Q  355 gatgtactgtaggtaataattgtatcattctaattagaaattctttttcttatatattctttaataacaagttgaaattctta-ttatttttatcttaat 453  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  20539610 gatgtattgtaggtaataattgtatcattctaattagaaattctttttcttatatattctttaataacaagttgaaattcttatttttttttatcttaat 20539709  T
Q  454 tagttttcaaattgtttatggatccgtttctaa 486  Q
    ||||||||||||| |||||||||||||||||||    
T  20539710 tagttttcaaattttttatggatccgtttctaa 20539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 20535948 - 20536032
Alignment:
Q  7 attctcaatataaagcatgacttcaacaaaaactacactctaattggtcaggttgtggactaattatgcaggcaatcctataaca 91  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20535948 attcacaatataaagcatgacttcaacaaaaactacactctaattggtcaggttgtggactaattatgcaggcaatcctataaca 20536032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 11449240 - 11449182
Alignment:
Q  279 ttttcttggttgaattaatattgctcactattaatatttattgttaaatttgaaatatt 337  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11449240 ttttgttggttgaatttatattgctcactattaatatttatttttaaatttgaaatatt 11449182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 11449319 - 11449271
Alignment:
Q  234 aaggttaaagagttgactcctcctactaacataattcactattattttt 282  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  11449319 aaggttaaagagttgactcctcctacaaacataatttactattgttttt 11449271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 11449128 - 11449045
Alignment:
Q  355 gatgtactgtaggtaataattgtatcattct-aattagaaattcttt-ttcttatatattctttaataacaagttgaaattctt 436  Q
    |||||| ||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||| || || | || |||||||||    
T  11449128 gatgtattgtagttaataattgtatcattctaaattagaaattttttattcttatatattcttaaaaaaaatgtagaaattctt 11449045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 20538127 - 20538068
Alignment:
Q  156 aaacatgactttt-attaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    ||||||||||||| |||||| |||| || |||||||||||||||||||||||| ||||||    
T  20538127 aaacatgactttttattaattatgggaccaaaatgaaaatttgaaattaattaggggacc 20538068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 8521351 - 8521270
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||  ||| ||||||| | |||||||| |||||||| | |||| || |||||||||| ||||||||||||| ||||||    
T  8521351 acggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaagggacc 8521270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 8523766 - 8523847
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||  ||| ||| ||||| |||||||| |||||||| | |||| || |||||||||| ||||||||||||| ||||||    
T  8523766 acggagacaaacatgaaggatcaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaggggacc 8523847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 32759068 - 32759128
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaa 193  Q
    |||||| ||||||||||||| | |||||||| |||||||| | ||||||| ||||||||||    
T  32759068 acggaggtgaacttgagggaccaaaacatgagttttattatttatggaactaaaatgaaaa 32759128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 1009257 - 1009206
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    |||||||| |||||||| | ||||||| |||||||||| |||||||||||||    
T  1009257 aaacatgagttttattagttatggaaccaaaatgaaaacttgaaattaatta 1009206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 1010384 - 1010465
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||  ||| ||||||| | |||||||| |||||||| | |||| || ||||| |||| ||||||||||||| ||||||    
T  1010384 acggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaataaaaacttgaaattaattaagggacc 1010465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 32757920 - 32757851
Alignment:
Q  134 cggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaatta 203  Q
    ||||| ||||||||||||| | |||||||| |||||||| | |||| || |||||||||| | |||||||    
T  32757920 cggaggtgaacttgagggaccaaaacatgagttttattatttatgggaccaaaatgaaaactggaaatta 32757851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 10459618 - 10459708
Alignment:
Q  244 agttgactcctcctactaacataattcactattatttttcttggttgaattaatattgctcactattaatatttattgttaaatttgaaatatt 337  Q
    |||||| |||||||| |||||||||||  | || ||||| ||   |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  10459618 agttgaatcctcctagtaacataattcttttttttttttttt---tgaattcatattgctcactattaatatttattgttaaatttaaaatatt 10459708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 10459797 - 10459851
Alignment:
Q  362 tgtaggtaataattgtatcattctaatt-agaaattctttttcttatatattctt 415  Q
    |||||||||||||||||| ||||||||| | ||||| || |||||||||||||||    
T  10459797 tgtaggtaataattgtattattctaattaaaaaattattattcttatatattctt 10459851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 42244727 - 42244653
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    |||||||| ||||| ||||| | |||||||| |||||||||| |||| |  ||||||||||||||||||||||||    
T  42244727 acggagatcaacttaagggaccaaaacatgagttttattaattatgggatcaaaatgaaaatttgaaattaatta 42244653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 46318632 - 46318711
Alignment:
Q  128 gacatacggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    |||| ||||||||  | |||||||| | ||||||||||||||||| | |||| |||||||| |||| |||||||||||||    
T  46318632 gacagacggagatacaattgagggaccaaaacatgacttttattagttatgggacaaaaatcaaaacttgaaattaatta 46318711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 42245912 - 42245986
Alignment:
Q  138 gatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatggga 212  Q
    |||||| |||||||| | ||| |||| |||||||||| ||||||| ||||| |||| ||||||||||||| ||||    
T  42245912 gatgaatttgagggaccaaaagatgagttttattaattatggaaccaaaataaaaacttgaaattaattaaggga 42245986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 46467229 - 46467168
Alignment:
Q  146 tgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    ||||||| |||||||||| |||||||| | |||| || |||||||||| |||||||||||||    
T  46467229 tgagggaccgaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaatta 46467168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 46468748 - 46468813
Alignment:
Q  142 aacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    ||||||| ||| |||||||||| |||||||| | |||| || ||||| ||||||||||||||||||    
T  46468748 aacttgatggaccgaaacatgagttttattagttatgggaccaaaataaaaatttgaaattaatta 46468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 15746809 - 15746867
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||| |||||||| | |||| || |||||||||||| ||||||||||| ||||||    
T  15746809 aaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattaggggacc 15746867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 17702297 - 17702376
Alignment:
Q  135 ggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||||||||||||| | ||||||   |||||||| | |||| || |||||||||||| ||||||||||| ||||||    
T  17702297 ggagatgaacttgagggaccaaaacataggttttattagttatgggaccaaaatgaaaattggaaattaattaagggacc 17702376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 14840932 - 14840991
Alignment:
Q  146 tgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaat 205  Q
    ||||||| | |||||||| |||||||| | |||| || ||||||||||||||||||||||    
T  14840932 tgagggaccaaaacatgaattttattagttatggtaccaaaatgaaaatttgaaattaat 14840991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 45437516 - 45437581
Alignment:
Q  147 gagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatggga 212  Q
    |||||| | |||||||| |||||||||| |||| |  |||||||||| ||||||||||||| ||||    
T  45437516 gagggaccaaaacatgagttttattaattatgggatcaaaatgaaaacttgaaattaattagggga 45437581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 38696395 - 38696323
Alignment:
Q  142 aacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    ||||||||||| | |||||||| |||||||| | |||  || |||||||||| || |||||||||| ||||||    
T  38696395 aacttgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttaaaattaattaggggacc 38696323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 34513596 - 34513654
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||| |||||||||| ||||||| |||||||||||| | ||||||||| ||||||    
T  34513596 aaacatgagttttattaattatggaaccaaaatgaaaattggtaattaattaggggacc 34513654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 35903592 - 35903530
Alignment:
Q  145 ttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    |||||||| | ||||||||||||||||| | |||| || |||||||||| |||||||||||||    
T  35903592 ttgagggaccaaaacatgacttttattagttatgggaccaaaatgaaaacttgaaattaatta 35903530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 37957022 - 37956964
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||| |||||||| | |||| || |||||||||||||||||||||||| ||||||    
T  37957022 aaacatgaattttattacttatgggaccaaaatgaaaatttgaaattaattaagggacc 37956964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 34148380 - 34148440
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaa 193  Q
    |||||| ||||||||||||| | |||||||| |||||||| | ||||||| ||||||||||    
T  34148380 acggaggtgaacttgagggaccaaaacatgagttttattatttatggaactaaaatgaaaa 34148440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 7753569 - 7753626
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||| ||| |||||| ||||| ||||| |||||||||||||||||||| ||||||    
T  7753569 aaacatgagtttaattaattatggaccaaaa-tgaaaatttgaaattaattaggggacc 7753626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 53435773 - 53435852
Alignment:
Q  133 acggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatggga 212  Q
    |||||| | ||||||||||  | |||||||| |||||||| | |||| || |||||||||| ||||||||||||| ||||    
T  53435773 acggaggtaaacttgaggggccaaaacatgagttttattacttatgggaccaaaatgaaaacttgaaattaattaaggga 53435852  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 53432149 - 53432079
Alignment:
Q  142 aacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatggga 212  Q
    ||||||||||| | |||||| | |||||||| | |||| || |||||||||| ||||||||||||| ||||    
T  53432149 aacttgagggaccaaaacataagttttattacttatgggaccaaaatgaaaacttgaaattaattaaggga 53432079  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 2162703 - 2162631
Alignment:
Q  135 ggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    |||||||||||||||||| | ||| |||| |||||||| | |||| || |||||||||| |  ||||||||||    
T  2162703 ggagatgaacttgagggaccaaaatatgagttttattagttatgggactaaaatgaaaactgaaaattaatta 2162631  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 24403340 - 24403261
Alignment:
Q  128 gacatacggagatgaacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    |||| |||||| ||||||||||||| | |||||| | |||||||||| |||  || | |||||||| |||||||||||||    
T  24403340 gacaaacggaggtgaacttgagggaccaaaacataaattttattaattatgagaccataatgaaaacttgaaattaatta 24403261  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 27827 - 27769
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    |||||||||||||||||   ||||||| |||||||||||| ||||||| ||| ||||||    
T  27827 aaacatgacttttattagatatggaaccaaaatgaaaattggaaattatttaagggacc 27769  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 45455424 - 45455473
Alignment:
Q  165 ttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    ||||||||||  ||| || |||||||||||||||||||||||| ||||||    
T  45455424 ttttattaattgtgggaccaaaatgaaaatttgaaattaattaagggacc 45455473  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 38539744 - 38539688
Alignment:
Q  156 aaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatggga 212  Q
    |||||||| |||||||| | |||| || |||||||||| ||||||||||||| ||||    
T  38539744 aaacatgagttttattatttatgggaccaaaatgaaaacttgaaattaattaaggga 38539688  T

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Target: scaffold2071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 710 - 775
Alignment:
Q  142 aacttgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaatta 207  Q
    ||||||||||| | |||||||| |||||||| | |||| || |||||||||| | |||||||||||    
T  710 aacttgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaatta 775  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 127516 - 127448
Alignment:
Q  146 tgagggatcgaaacatgacttttattaataatggaacaaaaatgaaaatttgaaattaattatgggacc 214  Q
    ||||||| | |||||||| |||||||| | |||| || |||| ||||| ||||||||||||| ||||||    
T  127516 tgagggaccaaaacatgagttttattagttatgggaccaaaacgaaaacttgaaattaattaggggacc 127448  T

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