View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-12 (Length: 433)
Name: NF4017-Insertion-12
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 3435717 - 3435390
Alignment:
| Q |
7 |
attatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgca |
106 |
Q |
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| T |
3435717 |
attatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaa |
3435618 |
T |
|
| Q |
107 |
cctccttcaaatttttaaaatatatattccaattaaaagatactattccacgcaatagtatctcttatactctctttaatccaatttttattatcccaaa |
206 |
Q |
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|||| ||||||| |||| | | || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3435617 |
cctctttcaaat--ttaacaca-atctt---------------tattccatgcaatagtatctcttatactctctttaatccaatttttattatcccaaa |
3435536 |
T |
|
| Q |
207 |
aataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-ttgtaaaaagattcgttttggaaatgaagttggctcctttannnnnnnaat |
305 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3435535 |
aataactaatgttgagattccatttaaaatatatattacgaaatcgttgttgtaaaaagattcgttttggaaatgaagttggctcctttatttttttaat |
3435436 |
T |
|
| Q |
306 |
gttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
351 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3435435 |
gttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
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