View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-14 (Length: 408)

Name: NF4017-Insertion-14
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-14
NF4017-Insertion-14
[»] chr4 (6 HSPs)
chr4 (214-405)||(52115968-52116179)
chr4 (8-113)||(52115792-52115897)
chr4 (139-180)||(43441046-43441087)
chr4 (136-166)||(22904301-22904331)
chr4 (136-166)||(22955969-22955999)
chr4 (144-172)||(4913096-4913124)
[»] chr5 (1 HSPs)
chr5 (139-193)||(27407842-27407896)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 214 - 405
Target Start/End: Original strand, 52115968 - 52116179
Alignment:
Q  214 aaaagagtaagtgcacaggcagcccaacttaccaataggcgcaagcttaccatcataagaaggaaaaaacaatgacagggagcctaacataaaagcctat 313  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52115968 aaaagagtaagtgtacatgcagcccaacttaccaataggcgcaagcttaccatcataagaaggaaaaaacaatgacaggaagcttaacataaaagcctat 52116067  T
Q  314 gctgcctaa--------------------aaaccaaagaagccgtggcacttattatagccaaaccaaagccaatcaatagtggccaaacgccgtcactt 393  Q
    |||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52116068 gctgcctaaaaaccaaatgacagaaacagaaaccaaagaagccgtggcacttattatagccaaaccaaagccaatcaacagtggccaaacgccgtcactt 52116167  T
Q  394 ccgtctaatgca 405  Q
    ||||||||||||    
T  52116168 ccgtctaatgca 52116179  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 52115792 - 52115897
Alignment:
Q  8 tatcttaggacacgaattaacattttatttattttcaattaaacagtcaaatccttctttctcctatagatattgcttcttttcattcttttttaatgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52115792 tatcttaggacacgaattaacattttatttattttcaattaaacagtcaaatccttctttctcctatagatattgcttcttttcattcttttttaatgaa 52115891  T
Q  108 cctgga 113  Q
    ||||||    
T  52115892 cctgga 52115897  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 43441046 - 43441087
Alignment:
Q  139 catattcaattgataagccaagcacaagatgtgcagatggca 180  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  43441046 catattcaattgataagccaagcacaagatgtgcaaatggca 43441087  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 22904301 - 22904331
Alignment:
Q  136 taacatattcaattgataagccaagcacaag 166  Q
    |||||||||||||||||||||||||||||||    
T  22904301 taacatattcaattgataagccaagcacaag 22904331  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 22955969 - 22955999
Alignment:
Q  136 taacatattcaattgataagccaagcacaag 166  Q
    |||||||||||||||||||||||||||||||    
T  22955969 taacatattcaattgataagccaagcacaag 22955999  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 4913096 - 4913124
Alignment:
Q  144 tcaattgataagccaagcacaagatgtgc 172  Q
    |||||||||||||||||||||||||||||    
T  4913096 tcaattgataagccaagcacaagatgtgc 4913124  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 27407842 - 27407896
Alignment:
Q  139 catattcaattgataagccaagcacaagatgtgcagatggcaccaagatacaaca 193  Q
    |||||||||||||| |||||||||||| ||||||| ||||| |  ||||||||||    
T  27407842 catattcaattgattagccaagcacaaaatgtgcaaatggcgcagagatacaaca 27407896  T

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