View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-15 (Length: 408)
Name: NF4017-Insertion-15
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 44691117 - 44690716
Alignment:
| Q |
8 |
gtaaagatgtcattttgtaacaaccaatacgattatcaagtaaaatattcaggtatgagttggaagcatcatgcatgaggaacattaacaaataatggtg |
107 |
Q |
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| T |
44691117 |
gtaaagatgtcattttgtaacaaccaatacgattatcaagtaaaatattcaggtatgagttggaagcatcatgcatgaggaacattaacaaataatggtg |
44691018 |
T |
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| Q |
108 |
aggtagctaagatccaaatcaagatgatataattgcgtacggataggtgacattcgaggaacataaatattcttcttgtctcccataattggttacttc- |
206 |
Q |
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| T |
44691017 |
aggtagctaagatccaaatcaagatgatataattgcgtacggataggtgacattcgaggaacataaatattcttcttgtctcccataattggttacttct |
44690918 |
T |
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| Q |
207 |
tttgctatatatgaaatgaaaaatccaaacactaagcttcttttctctaagaaaacaatggcagtcatagaaacaaatataaagagatctctgcatattc |
306 |
Q |
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| T |
44690917 |
tttgctatatatgaaatgaaaaatccaaacactaagcttcttttctctaagaaaacaatggcagtcatagaaacaaatataaagagatctctgcatatcc |
44690818 |
T |
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| Q |
307 |
gcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaaattgcaaagattgaagagttccgtaggtgactcttcagcttcat |
406 |
Q |
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| T |
44690817 |
gcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaaattgcaaagattgaagagttccgtaggtgactcttcagcttcat |
44690718 |
T |
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| Q |
407 |
ca |
408 |
Q |
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| T |
44690717 |
ca |
44690716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 255 - 400
Target Start/End: Complemental strand, 26567984 - 26567840
Alignment:
| Q |
255 |
aagaaaacaatggcagtcatagaaacaaatataaagagatctctgcatattcgcagcaacagcttacccctccacacctcaccctcttatatcacaattt |
354 |
Q |
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||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
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| T |
26567984 |
aagaaaaaaatggcagtcaatgaaacaaatataaagagctctcttcatattcgcagcaacagcttaccc-tccacacctcaccctcttatatcatatttt |
26567886 |
T |
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| Q |
355 |
gagaacaaattgcaaagattgaagagttccgtaggtgactcttcag |
400 |
Q |
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| T |
26567885 |
gagaacaatttgcaaatattgaagagttatgaaggtgactcttcag |
26567840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 26568274 - 26568040
Alignment:
| Q |
8 |
gtaaagatgtcattttgtaacaaccaatacgattatcaagtaaaatattcaggtatgagttggaagcatcatgcatgaggaacattaacaaataatggtg |
107 |
Q |
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| T |
26568274 |
gtaaagatgccattttgtaagaatcaatgcgatttccgagaaaagtattcagggatgagttggaagtatcatgcaagtggagcattaccagatcacggca |
26568175 |
T |
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| Q |
108 |
aggtagctaagatccaaatcaagatgatataattgcgtacgga-taggtgacattcgaggaacataaatattcttcttgtctcccataattggtt-actt |
205 |
Q |
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||||||||||||||||||||||||| |||||||||| ||| || ||||||||||| |||||||| |||||||||||||||| || ||||||||| | || |
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| T |
26568174 |
aggtagctaagatccaaatcaagattatataattgcatacagattaggtgacatttgaggaacaacaatattcttcttgtcttccttaattggttaattt |
26568075 |
T |
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| Q |
206 |
ctttgctatatatgaaatgaaaaatccaaacacta |
240 |
Q |
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| T |
26568074 |
ttttactatatatgaagtgaaaaatcaaaccacta |
26568040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 377
Target Start/End: Complemental strand, 26570708 - 26570595
Alignment:
| Q |
263 |
aatggcagtcatagaaacaaatataaagagatctctgcatattcgcagcaacagcttacccctccacacctcaccctcttatatcacaatttgagaacaa |
362 |
Q |
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|||||||||||| |||||||| | ||| || |||||||| ||||||||||||| ||| |||||| | |||||||||||| |||||||||||||| |||| |
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| T |
26570708 |
aatggcagtcattgaaacaaacacaaaaagctctctgcaccttcgcagcaacagttta-ccctcctctcctcaccctcttgtatcacaatttgaggacaa |
26570610 |
T |
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| Q |
363 |
attgcaaagattgaa |
377 |
Q |
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||| ||| |||||| |
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| T |
26570609 |
tttgaaaatattgaa |
26570595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 26570960 - 26570786
Alignment:
| Q |
49 |
aaaatattcaggtatgagttggaagcatcatgcatgaggaacattaacaaataatggtgaggtagctaagatccaaatcaagatgatataattgcgtacg |
148 |
Q |
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| T |
26570960 |
aaaaaattgagggatgagttggaagcttgatgcatggagagcattgccagatcatggtgaggtagctgagattcaaatcaagaagatataatttcatact |
26570861 |
T |
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| Q |
149 |
ga-taggtgacattcgaggaacataaatattcttcttgtctcccataattggttac-ttctttgctatatatgaa |
221 |
Q |
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| T |
26570860 |
aattaggtgacacttgaggaacacaaatattcgttttgtctccctcaatcggttactttgtttgctatatatgaa |
26570786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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