View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-16 (Length: 403)

Name: NF4017-Insertion-16
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-16
NF4017-Insertion-16
[»] chr1 (11 HSPs)
chr1 (8-403)||(46879040-46879443)
chr1 (26-218)||(29922349-29922544)
chr1 (16-197)||(5055917-5056099)
chr1 (270-359)||(29920734-29920823)
chr1 (21-153)||(6850145-6850281)
chr1 (294-359)||(6850642-6850707)
chr1 (299-359)||(3154821-3154881)
chr1 (45-125)||(37285479-37285560)
chr1 (27-125)||(38863434-38863533)
chr1 (105-218)||(3155195-3155310)
chr1 (81-126)||(26733425-26733471)
[»] chr4 (17 HSPs)
chr4 (21-218)||(37385729-37385932)
chr4 (20-218)||(42478121-42478318)
chr4 (21-218)||(31416518-31416717)
chr4 (29-218)||(48513365-48513556)
chr4 (20-218)||(29820148-29820348)
chr4 (30-208)||(52488655-52488836)
chr4 (296-359)||(42477791-42477854)
chr4 (23-218)||(48473418-48473615)
chr4 (270-359)||(37385383-37385473)
chr4 (20-218)||(53409817-53410013)
chr4 (294-359)||(31417009-31417074)
chr4 (294-359)||(52489087-52489152)
chr4 (294-359)||(53409454-53409519)
chr4 (27-124)||(33748237-33748335)
chr4 (294-359)||(48512995-48513060)
chr4 (295-353)||(29819826-29819884)
chr4 (27-122)||(54453868-54453964)
[»] chr6 (6 HSPs)
chr6 (21-218)||(27335447-27335646)
chr6 (21-218)||(27396187-27396386)
chr6 (45-125)||(18058415-18058496)
chr6 (294-350)||(27335955-27336011)
chr6 (294-350)||(27396695-27396751)
chr6 (21-125)||(7695185-7695290)
[»] chr8 (6 HSPs)
chr8 (20-218)||(9232818-9233020)
chr8 (294-359)||(9233329-9233394)
chr8 (23-103)||(32039052-32039132)
chr8 (27-125)||(30152403-30152502)
chr8 (27-125)||(31664819-31664918)
chr8 (81-125)||(35176397-35176442)
[»] chr3 (8 HSPs)
chr3 (21-218)||(26251182-26251381)
chr3 (294-357)||(49015938-49016001)
chr3 (27-124)||(7944225-7944323)
chr3 (22-126)||(49015465-49015569)
chr3 (27-125)||(19647627-19647726)
chr3 (294-359)||(26250840-26250905)
chr3 (163-218)||(49015592-49015647)
chr3 (182-218)||(24741233-24741269)
[»] chr2 (6 HSPs)
chr2 (28-218)||(34024743-34024936)
chr2 (27-126)||(14360106-14360205)
chr2 (163-214)||(23761098-23761149)
chr2 (42-125)||(7000447-7000531)
chr2 (317-359)||(34025237-34025279)
chr2 (45-122)||(42481219-42481296)
[»] chr7 (2 HSPs)
chr7 (20-127)||(42010683-42010790)
chr7 (295-359)||(42011124-42011188)
[»] chr5 (6 HSPs)
chr5 (45-153)||(32772349-32772461)
chr5 (294-359)||(32771590-32771655)
chr5 (27-125)||(14136402-14136501)
chr5 (27-124)||(11782165-11782263)
chr5 (45-125)||(1463735-1463816)
chr5 (45-124)||(40323394-40323474)
[»] scaffold0006 (1 HSPs)
scaffold0006 (295-359)||(282531-282595)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 46879040 - 46879443
Alignment:
Q  8 gcatctagatcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaatttt 107  Q
    |||||||||||||| || ||||||||| ||| |||||||||||||||| |||||| ||| || |||||||||| ||||||||||||||||||||||||||    
T  46879040 gcatctagatcaagatttcgtataaaatgaacccatgaaaatattggtccatgatggactaattttttcaatggttagattatatgaatccctaaatttt 46879139  T
Q  108 atcatggtctataaacactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatat 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||| |||||||||||||||||||||||||||||    
T  46879140 atcatggtctataaacactctaacccatcttcccttataattttattaaaaaaaatcattttcaccctttataattattataatttaaaatattacatat 46879239  T
Q  208 ttttacggtaa--nnnnnnnnnnnnnnntttggtacagtaatttttgttgttggtattataatt------cggttatcaattatttannnnnnncattgt 299  Q
    ||||||| |||                 ||||||||||||||||||||||||||||||||||||      |||||||||||||||||       ||||||    
T  46879240 ttttacgttaattttcttttggaaaaattttggtacagtaatttttgttgttggtattataattcagttacggttatcaattatttatttttttcattgt 46879339  T
Q  300 ttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaatattcatggtcactaatacacatataaacatcaacatgcatc 399  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46879340 ttttgtagaatcgtcaaattatccattcaaaaagaataataacagcagtaataataaatattcatggtcactaatacacatataaacatcaacatgcatc 46879439  T
Q  400 aacc 403  Q
    ||||    
T  46879440 aacc 46879443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 29922544 - 29922349
Alignment:
Q  26 cgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac 125  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  29922544 cgtataaaatgaatccatggaaatattggttcatgatggaccaattttttcaatggttagattatatgaacccttaaattttatcatggtctataaacac 29922445  T
Q  126 tctaacccatcttctcttataattttat---ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 218  Q
    |||||||||||||| |||||||||||||            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29922444 tctaacccatcttcccttataattttataaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacggtaa 29922349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 5056099 - 5055917
Alignment:
Q  16 atcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggt 115  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  5056099 atcaaggttccttataaaatgaacccatgaaaatattggtccatgatggaccaa-tttttcaatggttagattatatgaatccctaaatcttatcatggt 5056001  T
Q  116 ctataaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaa 197  Q
    ||||||||||    |||||||||| || |||||| ||||||  |       ||||||| ||||||| |||||||||||||||||||    
T  5056000 ctataaacactaaatctaacccatattttcttatcatttta--taaaaaaatcatttttaccctttataattattataatttaaaa 5055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 29920823 - 29920734
Alignment:
Q  270 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||||||||||       ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29920823 cggttatcaattatttatttttttcattgtttttgtagaatagtcatattatcctttcaaaaagaataataatagcagtaataataaata 29920734  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 6850145 - 6850281
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 120  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||  ||| ||||||||||||| ||||||    
T  6850145 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattagatgagccccaaaattttatcatgatctata 6850244  T
Q  121 aa----cactctaacccatcttctcttataattttat 153  Q
    ||    || |||||||||||||| ||||| |||||||    
T  6850245 aacattcaatctaacccatcttcccttatcattttat 6850281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 6850642 - 6850707
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  6850642 cattgtttttttagaatagtcatattatcctttccaaaagactaataacagcagtaataataaata 6850707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 3154881 - 3154821
Alignment:
Q  299 tttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    ||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  3154881 tttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 3154821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 37285479 - 37285560
Alignment:
Q  45 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| |||||||||| | |||||||||||||||||||||||||    
T  37285479 aaaatattggtccatgatggaccaatttttggtatcattagatcatatgaatccaccaaattttatcatggtctataaacac 37285560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 38863434 - 38863533
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  38863434 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 38863533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 3155310 - 3155195
Alignment:
Q  105 tttatcatggtctataaacactc----taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatat 200  Q
    ||||||||| |||||||||||||    |||||||||||| ||||| |||||||         ||||||| | ||||| |||||||| |||||||||||||    
T  3155310 tttatcatgatctataaacactcaatctaacccatcttcccttatcattttat--aaaaaattcatttttatcctttataattattttaatttaaaatat 3155213  T
Q  201 tacatatttttacggtaa 218  Q
    |||||||| ||| |||||    
T  3155212 tacatattgttatggtaa 3155195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 26733471 - 26733425
Alignment:
Q  81 attagattatatgaatcc-ctaaattttatcatggtctataaacact 126  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||    
T  26733471 attagattatatgaacccaccaaattttatcatggtctataaacact 26733425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 37385932 - 37385729
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 120  Q
    |||||||||||||| |||| |||| ||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37385932 ggttccgtataaaatgaattcatggaaatattggtctatgatagaccaattttttcaatgattagattatatgaacccctaaattttatcatggtctata 37385833  T
Q  121 aacactctaacccatcttctcttataattttat------ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacg 214  Q
    ||||||||||||||||||| |||||||| ||||               ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37385832 aacactctaacccatcttcccttataatattataaaaaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacg 37385733  T
Q  215 gtaa 218  Q
    ||||    
T  37385732 gtaa 37385729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 42478318 - 42478121
Alignment:
Q  20 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 119  Q
    ||||||||||||||| ||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||| || || ||||||||||||||||||||    
T  42478318 aggttccgtataaaatgaacccatgaaaatattgattcatgatggatcaattttttcaatgattagattatataaacccttaaattttatcatggtctat 42478219  T
Q  120 aaacactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 218  Q
    | ||||||||| |||||||| |||||||||||| |        ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  42478218 acacactctaatccatcttcccttataatttta-taaaaaaaatcattttcaccctttataattatgataatttaaaatattacatatttttacggtaa 42478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 31416518 - 31416717
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 120  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| ||||| || | |||||||| |||||  || ||||||||||||| ||||||    
T  31416518 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaatttttttaacggttagattacatgaactccaaaattttatcatgatctata 31416617  T
Q  121 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 216  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  31416618 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggt 31416715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 48513556 - 48513365
Alignment:
Q  29 ataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac--- 125  Q
    |||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||       
T  48513556 ataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactca 48513457  T
Q  126 -tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 218  Q
     |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| | ||||||||||||||||||| ||| |||||    
T  48513456 atctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttcatttaaaatattacatattgttatggtaa 48513365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 29820348 - 29820148
Alignment:
Q  20 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 119  Q
    ||||||| | ||||| ||| |||||| |||||||||| ||||| |||||| |||||||| | ||| |||| ||||| ||| ||||||||||||| |||||    
T  29820348 aggttccttgtaaaatgaacccatgagaatattggtttatgatggaccaattttttcaacggttaaattagatgaaccccaaaattttatcatgatctat 29820249  T
Q  120 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 215  Q
    ||||||    ||||||||||||||  |||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  29820248 aaacactcaatctaacccatcttcctttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 29820151  T
Q  216 taa 218  Q
    |||    
T  29820150 taa 29820148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 52488655 - 52488836
Alignment:
Q  30 taaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc-- 127  Q
    ||||| ||||| |||| |||||||||  | ||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||||      
T  52488655 taaaatgaatctatgagaatattggtctaagatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaa 52488754  T
Q  128 --taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatt 208  Q
      |||||||||||| ||||| |||||| |        ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  52488755 tttaacccatcttcccttatcatttta-taaaaaaaatcatttttaccctttataattattttaatttaaaatattacatatt 52488836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 42477854 - 42477791
Alignment:
Q  296 ttgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42477854 ttgtttttgtagaatagtcatattatcctttcaaaaataataataatagcagtaataataaata 42477791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 48473418 - 48473615
Alignment:
Q  23 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaa 122  Q
    |||| ||||||| ||| |||| | |||||||||| | ||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||| ||    
T  48473418 ttccttataaaatgaaaccataagaatattggtttacgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctatgaa 48473517  T
Q  123 ----cactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 218  Q
        || |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  48473518 tactcaatctaacccatcttcccttattatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggtaa 48473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 37385473 - 37385383
Alignment:
Q  270 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttca-aaaagaataataatagcagtaataataaata 359  Q
    |||||||||||||||||       |||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  37385473 cggttatcaattatttatttttttcattgtttttgtagaatcgtcatattatcctttcaaaaaaaaataataataacagtaataataaata 37385383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 53410013 - 53409817
Alignment:
Q  20 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 119  Q
    ||||||| ||||||| ||| |||||| ||||||| || | ||| || ||| |||||||| | |||||||| ||||||||| ||||||||||||| |||||    
T  53410013 aggttccttataaaatgaacccatgagaatattgatttaagatggatcaattttttcaacggttagattaaatgaatcccaaaattttatcatgatctat 53409914  T
Q  120 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 215  Q
    ||||||    ||||||||||| | |||    ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  53409913 aaacactcaatctaacccatcctttct----atttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 53409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 31417009 - 31417074
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  31417009 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 31417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 52489087 - 52489152
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  52489087 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 52489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 53409519 - 53409454
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  53409519 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 53409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 33748335 - 33748237
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaaca 124  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  33748335 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccatcaaattttatcatggtctataaaca 33748237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 48513060 - 48512995
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  48513060 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 48512995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 29819884 - 29819826
Alignment:
Q  295 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataa 353  Q
    ||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  29819884 attgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataa 29819826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 54453868 - 54453964
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaa 122  Q
    |||||||| ||| | || |||||||||||| ||||| || ||| |||||  |  ||||||| ||||||| || | ||||||||||||||||||||||    
T  54453868 gtataaaatgaacctataaaaatattggtttatgatggatcaattttttgtaccattagatcatatgaacccatcaaattttatcatggtctataaa 54453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 27335447 - 27335646
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 120  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27335447 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27335546  T
Q  121 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 216  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27335547 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27335644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 27396187 - 27396386
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 120  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27396187 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27396286  T
Q  121 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 216  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27396287 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27396384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 18058415 - 18058496
Alignment:
Q  45 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    ||||||||||| |||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  18058415 aaaatattggtccatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 18058496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 27335955 - 27336011
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 350  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27335955 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27336011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 27396695 - 27396751
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 350  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27396695 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 7695290 - 7695185
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctat 119  Q
    ||||| |||||||| ||| |||| || ||||||||  ||||| |||||   ||||||||| |||||| |||| || || |||||| ||||||||||| ||    
T  7695290 ggttctgtataaaatgaacccatcaagatattggtcgatgatggaccagtcttttcaatgcttagatcatatcaacccactaaatcttatcatggtccat 7695191  T
Q  120 aaacac 125  Q
    ||||||    
T  7695190 aaacac 7695185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 9232818 - 9233020
Alignment:
Q  20 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 119  Q
    ||||||| ||||||| ||| |||||| ||||||| | |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||    
T  9232818 aggttccttataaaatgaacccatgagaatattgatccatgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctat 9232917  T
Q  120 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 215  Q
    ||||||    |||||||||||||| ||||| |||||||         ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  9232918 aaacactcaatctaacccatcttcccttatcattttataaaaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 9233017  T
Q  216 taa 218  Q
    |||    
T  9233018 taa 9233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 9233329 - 9233394
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  9233329 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 9233394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 32039132 - 32039052
Alignment:
Q  23 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaa 103  Q
    |||| ||||||| ||| ||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||| ||||||    
T  32039132 ttccttataaaatgaacccatgaaaatattggtttatgatggatcaattttttcaatggttagattatatgaattcctaaa 32039052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 30152502 - 30152403
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    |||||||| ||| |||| || |||||||| |||||| ||||||  ||||||||| ||||||||||| || || |||||| ||| ||||||| ||||||||    
T  30152502 gtataaaatgaacccatcaagatattggtccatgatggaccaatcttttcaatgtttagattatatcaacccactaaatcttaccatggtccataaacac 30152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 31664918 - 31664819
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaacac 125  Q
    |||||||| ||| | || ||||||||||| |||||| || ||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  31664918 gtataaaatgaacctataaaaatattggtccatgatggaacaattttttgtaccattagatcatatgaactcaccaaattttatcatggtctataaacac 31664819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 35176397 - 35176442
Alignment:
Q  81 attagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||    
T  35176397 attagattatatgaatccaccaaattttatcatggtccataaacac 35176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 26251381 - 26251182
Alignment:
Q  21 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 120  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||||    
T  26251381 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattaaatgaaccccaaaattttatcatgatctata 26251282  T
Q  121 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 216  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||| ||| |||||||| ||||||||||||||||||||| ||| |||    
T  26251281 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccttttataattattttaatttaaaatattacatattgttatggt 26251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 49015938 - 49016001
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaa 357  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  49015938 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaa 49016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 7944225 - 7944323
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 124  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  7944225 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaaca 7944323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 49015465 - 49015569
Alignment:
Q  22 gttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataa 121  Q
    ||||| ||||||| |||||  ||| |||||||||  ||||| |||||| |||||||| | |||||||| ||||| | | ||||||||||||| |||||||    
T  49015465 gttccttataaaatgaatctctgagaatattggtctatgatggaccaattttttcaacggttagattaaatgaacctcaaaattttatcatgatctataa 49015564  T
Q  122 acact 126  Q
    |||||    
T  49015565 acact 49015569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 19647627 - 19647726
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    |||||||| ||| | || ||||||||||| |||||| ||||||||||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  19647627 gtataaaatgaacctataaaaatattggtccatgatggaccaaatttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 19647726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 26250905 - 26250840
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||| ||| |||||||||||    
T  26250905 cattgtttttttagaatagtcatattatcctttccaaaagactaataataacagcaataataaata 26250840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 49015592 - 49015647
Alignment:
Q  163 tcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 218  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  49015592 tcatttttatcctttataattattttaatttaaaatattacatattgttatggtaa 49015647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 24741269 - 24741233
Alignment:
Q  182 ttattataatttaaaatattacatatttttacggtaa 218  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  24741269 ttattataatttaaaatattacatattgttatggtaa 24741233  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 34024743 - 34024936
Alignment:
Q  28 tataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc 127  Q
    ||||||| ||| ||||||||||||| ||  || || ||||||  ||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||     
T  34024743 tataaaatgaacccatgaaaatatttgtctattatggaccaatattttcaatagttagattatatgaatccctaaatcttatcatgatctataaacacta 34024842  T
Q  128 ----taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 218  Q
        ||||||||||| |||||| |||||| |        ||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  34024843 aatttaacccatcttttcttatcatttta-taaaaaaaatcatttttaccctttataattattataatttaaaatactacatattattactgtaa 34024936  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 14360106 - 14360205
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacact 126  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||| |||||||| | |||||||||||||| | |||||| ||| |||| ||||||||||||    
T  14360106 gtataaaatgaacccatgaaaatattggtccatcatagaccaattttttcaacggttagattatatgaaccactaaatcttaccatgatctataaacact 14360205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 23761098 - 23761149
Alignment:
Q  163 tcattttcaccctttgtaattattataatttaaaatattacatatttttacg 214  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||||    
T  23761098 tcatttttagcctttataattattataatttaaaatattacatattgttacg 23761149  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 7000531 - 7000447
Alignment:
Q  42 atgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatc-cctaaattttatcatggtctataaacac 125  Q
    ||||||||||||||  ||||| |||||| |||||  |  |||||||||||||||||  | ||||||||| |||||||||||||||    
T  7000531 atgaaaatattggtctatgatggaccaattttttgtaccattagattatatgaatctaccaaattttattatggtctataaacac 7000447  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 34025237 - 34025279
Alignment:
Q  317 attatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  34025237 attatactttccaaaagaatagtaatagcagtaataataaata 34025279  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 42481219 - 42481296
Alignment:
Q  45 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaa 122  Q
    ||||||||||| |||||| |||||| ||||| |   ||||||| |||||||||| | ||||||||||||||||||||||    
T  42481219 aaaatattggtccatgatggaccaatttttttacc-attagatcatatgaatccaccaaattttatcatggtctataaa 42481296  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 42010683 - 42010790
Alignment:
Q  20 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 119  Q
    ||||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | ||||| || ||||| ||| ||||||||||||| |||||    
T  42010683 aggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagaatagatgaaccccaaaattttatcatgatctat 42010782  T
Q  120 aaacactc 127  Q
    ||||||||    
T  42010783 aaacactc 42010790  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 42011124 - 42011188
Alignment:
Q  295 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    ||||||||| || ||| |||| ||||||||||| |||||| |||||||||||| |||||||||||    
T  42011124 attgtttttttaaaatagtcatattatcctttccaaaagactaataatagcagcaataataaata 42011188  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 32772461 - 32772349
Alignment:
Q  45 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac----tctaacccatcttct 140  Q
    |||||||||||  ||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||    ||||||||||||||     
T  32772461 aaaatattggtctatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaatctaacccatcttcc 32772362  T
Q  141 cttataattttat 153  Q
    ||||| |||||||    
T  32772361 cttatcattttat 32772349  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 32771655 - 32771590
Alignment:
Q  294 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  32771655 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 32771590  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 14136501 - 14136402
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  14136501 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 14136402  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 11782263 - 11782165
Alignment:
Q  27 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 124  Q
    |||||||| ||| | || ||||||||||| |||||| |||||| |||||  |   |||||| ||||||| || | ||||||||||||||||||||||||    
T  11782263 gtataaaatgaacctataaaaatattggtccatgatggaccaattttttgtaccgttagatcatatgaacccaccaaattttatcatggtctataaaca 11782165  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 1463816 - 1463735
Alignment:
Q  45 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 125  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| ||||||| || | ||||||||||||| |||||||||||    
T  1463816 aaaatattggtccatgatggaccaatttttgatatcattagatcatatgaacccaccaaattttatcatgatctataaacac 1463735  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 40323474 - 40323394
Alignment:
Q  45 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaaca 124  Q
    |||||||||||  ||||| |||||| |||||  |  ||||||||||||||| || | |||| |||||||||||||||||||    
T  40323474 aaaatattggtctatgatggaccaattttttgtaccattagattatatgaactcaccaaatcttatcatggtctataaaca 40323394  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 282595 - 282531
Alignment:
Q  295 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 359  Q
    ||||||||  |||||| |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  282595 attgttttcttagaatagtcatattatcctttttaaaagactaataatagcagtaataataaata 282531  T

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