View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-17 (Length: 386)

Name: NF4017-Insertion-17
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-17
NF4017-Insertion-17
[»] chr1 (5 HSPs)
chr1 (8-386)||(26790393-26790771)
chr1 (10-386)||(26817103-26817475)
chr1 (188-386)||(26830746-26830944)
chr1 (8-371)||(26784040-26784401)
chr1 (8-100)||(26831030-26831122)
[»] chr7 (1 HSPs)
chr7 (188-386)||(41920374-41920572)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 26790771 - 26790393
Alignment:
Q  8 taaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26790771 taaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaag 26790672  T
Q  108 gttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26790671 gttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttg 26790572  T
Q  208 ttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcatattgttacctgcaactg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||    
T  26790571 ttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtgcacgtacacacatttgtgttctattgcatattgttacctgcaactg 26790472  T
Q  308 ttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgg 386  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26790471 ttatggttcctgaggttgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgg 26790393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 26817475 - 26817103
Alignment:
Q  10 aaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | |||||||||| | | |||||||||||  |     |    
T  26817475 aaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaattatt---t 26817379  T
Q  110 tgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgtt 209  Q
    | ||||||   |||||  | | | | |||||||| ||| |||| || | |||||||  |||| |||||||||| |  | ||||||||||||||||||||     
T  26817378 taatccttgt-tgaattcactagtcgattataatttaacttatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtg 26817280  T
Q  210 gaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcatattgttacctgcaactgtt 309  Q
    ||||||| || ||||||||| || |||||||||| ||| |||||||||||| || |||||||||||||||||||||||| |  |||||||||||||||||    
T  26817279 gaagaagttatatattgtttgcaattttttctttgttcaaaagattgtggtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgtt 26817180  T
Q  310 atggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgg 386  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26817179 atggtgcctgagattgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttctaaaagctgttgg 26817103  T

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Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 188 - 386
Target Start/End: Complemental strand, 26830944 - 26830746
Alignment:
Q  188 cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg 287  Q
    ||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||| |||||||||| ||| ||  |||||||||| ||||||||    
T  26830944 cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattg 26830845  T
Q  288 catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgg 386  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||    
T  26830844 cattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttgg 26830746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 26784401 - 26784040
Alignment:
Q  8 taaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaag 107  Q
    |||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||  ||||||||||| |||||| ||||||||      |    
T  26784401 taaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattatggagattctcacaaacaaggtaatt----g 26784306  T
Q  108 gttgatcctttaatgaatatattggccaattataatataatttattatatgaat--tcatcaatgtgcttgtttaattttaccattgcagaaagtgtctt 205  Q
    |||| ||  || ||||||| | |  | | ||| ||| ||| |||| |||  |||  ||||  || ||||  ||||||||  | || ||||||||||||||    
T  26784305 gttggtctcttgatgaatacactacctacttacaatttaaattatgataaaaatattcattcatctgctaatttaatttgtctatggcagaaagtgtctt 26784206  T
Q  206 tgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcatattgttacctgcaac 305  Q
    ||| ||||||   | |||| |||||||||||||||||| | || ||||||||||| || ||| ||||||||||||| ||||||||  |||||||||||||    
T  26784205 tgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacatttgtgttatattgcattgtgttacctgcaac 26784106  T
Q  306 tgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct 371  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  26784105 tgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccct 26784040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 26831122 - 26831030
Alignment:
Q  8 taaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaa 100  Q
    |||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||||||    
T  26831122 taaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaatggagattgtcacaaacaaggtaa 26831030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 386
Target Start/End: Original strand, 41920374 - 41920572
Alignment:
Q  188 cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg 287  Q
    |||||||||||||||| |||| ||||||| ||||| |  |||||||||| |||||| |||| ||  |  | |  || ||  | || |||||||| |||||    
T  41920374 cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattg 41920473  T
Q  288 catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgg 386  Q
    |||  |  |||||||||| ||| |||||||||| ||||  || || ||||||||| |||||||| | |||||  | ||||| |||||||| || |||||    
T  41920474 cattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttgg 41920572  T

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