View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-18 (Length: 328)
Name: NF4017-Insertion-18
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 46887619 - 46887298
Alignment:
| Q |
7 |
agaaaacttttcaaatttctccgatttattttaaatatttgatagttagggtttagacataattttagttactttgacctatttccatttgatttgtaag |
106 |
Q |
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| T |
46887619 |
agaaaacttttcaaatttctccgatttattttaaatatttgatagttagggtttagacataattgtagttactttgacctatttccatttgatttgtaag |
46887520 |
T |
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| Q |
107 |
tcgaaagatnnnnnnngttcaaagaggataaaagaacaaagaactgatccagctttgggcaatttgctaaatgcgccaacaaatgaccgggcgaatcaac |
206 |
Q |
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| T |
46887519 |
ttgaaagataaaaaaagttcaaagaggacaaaagaacaaagaactgatccagctttgggcaatttgctaaatgcgccaacaaatgaccgggcgaatcaac |
46887420 |
T |
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| Q |
207 |
acgaagggaaagaggggcaagataattcattaagcgacccactaaacttctcagtgaaagacgggcaagataattcaacgcgtttcggcacctcaaactt |
306 |
Q |
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| T |
46887419 |
atgaagggaaagaggggcaagataattcattaagcgacccactaaacttctcagtgaaagaggggcaagataattcaacgcgtttcggcacctcaaacat |
46887320 |
T |
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| Q |
307 |
agtgttttggtccgtagacatg |
328 |
Q |
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| T |
46887319 |
agcgttttggcccgtagacatg |
46887298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 46893601 - 46893535
Alignment:
| Q |
38 |
taaatatttgatagttagggtttagacataattttagttactttgacctatttccatttgatttgta |
104 |
Q |
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| T |
46893601 |
taaatatctgatagttaggttttagacacaatcattgtgactttgatctatttccatttgatttgta |
46893535 |
T |
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