View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-19 (Length: 289)

Name: NF4017-Insertion-19
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-19
NF4017-Insertion-19
[»] chr5 (1 HSPs)
chr5 (7-289)||(39578673-39578955)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 39578673 - 39578955
Alignment:
Q  7 actttgtgtccccaaacttttcttatgagcagaggttgaaggttttcctatatacgcatctataggtggcttcattaattcatccttatggtttaagttt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578673 actttgtgtccccaaacttttcttatgagcagaggttgaaggttctcctatatacgcatctataggtggcttcattaattcatccttatggtttaagttt 39578772  T
Q  107 ggaggttgaggctcatttttatcatcatcatcatataatttcttgatagttcttagcatccatgccaaggtagagttctcatctagtggttttcctttta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  39578773 ggaggttgaggctcatttttatcatcatcatcatataatttcttgatagttcttagcatccatgccaagttagagttttcatctagtggttttcctttta 39578872  T
Q  207 atgcatccttaacctcgtttgacatctgcctcaaagacgccattcgatcttgtaatttgtctttaatggcattgtcttccaca 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578873 atgcatccttaacctcgtttgacatctgcctcaaagacgccattcgatcttgtaatttgtctttaatggcattgtcttccaca 39578955  T

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