View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-20 (Length: 273)
Name: NF4017-Insertion-20
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-20 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 4028138 - 4027873
Alignment:
| Q |
8 |
gtttgcccctgctattttatatttaaataatggtgacattaatannnnnnnaataatatacagatctaatgctctgtgggagtgtgaatgtgtattagtt |
107 |
Q |
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| T |
4028138 |
gtttgcccctgctattttatatttaaataatggtgacattaatatttttttaataatatacagatctaatgctctgtgggagtgtgaatgtgtattagtt |
4028039 |
T |
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| Q |
108 |
cacactttaaactgcaaggtcaatgacattcatatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcagg |
207 |
Q |
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| T |
4028038 |
cacactttaaactgcaaggtcaatgacattcatatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcagg |
4027939 |
T |
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| Q |
208 |
ctatggccattaattttgctttctgtgatcttttcatttcatttcttttctctttcgttccggtaa |
273 |
Q |
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| T |
4027938 |
ctatggccattaattttgctttctgtgatcttttcatttcatttcttttctctttcgttccggtaa |
4027873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 3950879 - 3951000
Alignment:
| Q |
147 |
gaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttctgtgatcttttcattt |
246 |
Q |
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| T |
3950879 |
gaaagttgaatcagatctctagcagccaaaacattgaaggtcagaaattgctttcttattgctatgaccgttaatttaattttttgtgatattttctttt |
3950978 |
T |
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| Q |
247 |
catttcttttctctttcgttccg |
269 |
Q |
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| T |
3950979 |
cattt-ttttctgtttcgttccg |
3951000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 4216055 - 4215913
Alignment:
| Q |
91 |
gtgaatgtgtattagttcacactttaaactgcaaggtcaatgacatt--------catatgagtgaaagtcgaatcagatctctagcagccaaagcattc |
182 |
Q |
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| T |
4216055 |
gtgaatgtgtacgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatctctagcggccaaagcattg |
4215956 |
T |
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| Q |
183 |
aaggtcagtaattgctttcttcaggctatggccattaattttg |
225 |
Q |
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| T |
4215955 |
aagttccgttatagctttcttatggctatcaccattacttttg |
4215913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 3796931 - 3796811
Alignment:
| Q |
91 |
gtgaatgtgtattagttcacactttaaactgcaaggtcaatgacatt--------catatgagtgaaagtcgaatcagatctctagcagccaaagcattc |
182 |
Q |
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| T |
3796931 |
gtgaatgtgtatgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatcactagcggccaaagcattg |
3796832 |
T |
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| Q |
183 |
aaggtcagtaattgctttctt |
203 |
Q |
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| T |
3796831 |
aagttccgttatagctttctt |
3796811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
| Q |
139 |
atatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctt |
199 |
Q |
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| T |
3961099 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
3961159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4221283 - 4221238
Alignment:
| Q |
154 |
gaatcagatctctagcagccaaagcattcaaggtcagtaattgctt |
199 |
Q |
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| T |
4221283 |
gaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt |
4221238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 3822750 - 3822703
Alignment:
| Q |
154 |
gaatcagatctctagcagccaaagcattcaaggtcagtaattgctttc |
201 |
Q |
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| T |
3822750 |
gaatcagatctctagcaaacaaagcatttaaggtcagtaatttctttc |
3822703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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