View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-21 (Length: 270)
Name: NF4017-Insertion-21
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 31221562 - 31221827
Alignment:
| Q |
8 |
catgtctcattctagtattttgttctgaaaaagacaatctaaccatctaaatctccgaaaatattcagcatatgtgacatgactacatgagtgactcaaa |
107 |
Q |
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| T |
31221562 |
catgtctcattctagtattttgttctgaaaaagacaatctaaccatctaaatctccgaaaatattcagcacatgtgacatgactacatgagtgactcaaa |
31221661 |
T |
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| Q |
108 |
tagtaggtactcacaacctatgaagcactaatagtgacacatacacgtgaacaccggtaataatttgaaataatagattaatttaaggtaatcacattgt |
207 |
Q |
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| T |
31221662 |
tagtaggtactcacagcctatgaagcactaatagtgatacatacacgtgaacaccggtaataatttggaataatagattaatttaacgtaatcacattgt |
31221761 |
T |
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| Q |
208 |
gtcagtgttgtgtcggacatgtcatc---catcataagtgtaagtgccacagagctcacaacaaca |
270 |
Q |
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| T |
31221762 |
gtcagtgttgtgtcggatatgtcatccatcatcataagtgtcagtgccacagagctcacaacaaca |
31221827 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 5461222 - 5461178
Alignment:
| Q |
163 |
ggtaataatttgaaataatagattaatttaaggtaatcacattgt |
207 |
Q |
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| T |
5461222 |
ggtaataatttgagataataaattaattgaatgtaatcacattgt |
5461178 |
T |
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