View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-25 (Length: 219)
Name: NF4017-Insertion-25
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 42463914 - 42464126
Alignment:
| Q |
7 |
agcaacctcggtggctacaaaaatgaaggttttgttgaggttcttgctgctcagcaaagtcctgagaatcctaattggttccaggtataacattgcctta |
106 |
Q |
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| T |
42463914 |
agcaacctcggtggctacaaaaatgaaggttttgttgaggttcttgctgctcagcaaagtcctgagaatcctaattggttccaggtataactttgcctta |
42464013 |
T |
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| Q |
107 |
actatgttttcaattagctttcctctttatatttttcgtttttaatcggttttataattgtgttatgctcatctttaactacgttttactttggaaagtt |
206 |
Q |
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| T |
42464014 |
actatgttttcaattagctttcctctttatattttttgtttttaatcggttttataattgtgttatgctcatcttgaactacgttttactttggaaagtt |
42464113 |
T |
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| Q |
207 |
agtaatttactag |
219 |
Q |
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||||||||||||| |
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| T |
42464114 |
agtaatttactag |
42464126 |
T |
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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 37077979 - 37078065
Alignment:
| Q |
7 |
agcaacctcggtggctacaaaaatgaaggttttgttgaggttcttgctgctcagcaaagtcctgagaatcctaattggttccaggta |
93 |
Q |
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|||||| | ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||||| |
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| T |
37077979 |
agcaacatgggtggttacaaaaatgaaggtttcgttgaggttcttgctgcacagcagagtcctgagaatccaaactggttccaggta |
37078065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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