View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-33 (Length: 102)

Name: NF4017-Insertion-33
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-33
NF4017-Insertion-33
[»] chr1 (5 HSPs)
chr1 (8-102)||(12175283-12175377)
chr1 (8-82)||(12188257-12188329)
chr1 (8-82)||(12182252-12182324)
chr1 (53-102)||(12149469-12149518)
chr1 (54-102)||(12146291-12146339)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 5e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 12175283 - 12175377
Alignment:
Q  8 tcattttcatcgatcaatatacaatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctcttggcttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12175283 tcattttcatcgatcaatatacaatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctcttggcttcca 12175377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 12188257 - 12188329
Alignment:
Q  8 tcattttcatcgatcaatatacaatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttct 82  Q
    |||||||||||||||||||  ||||||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  12188257 tcattttcatcgatcaata--caatagtttcacaataagctataagaaaatgaattccaaagggttactttttct 12188329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 12182252 - 12182324
Alignment:
Q  8 tcattttcatcgatcaatatacaatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttct 82  Q
    |||||||||||||||||||  |||||||||||   |||| ||||| |||||||||||||||||||||||||||||    
T  12182252 tcattttcatcgatcaata--caatagtttcacgataagctataacaaaatgaattccaaagggttactttttct 12182324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 12149469 - 12149518
Alignment:
Q  53 gaaaatgaattccaaagggttactttttctagctatgctcttggcttcca 102  Q
    ||||||||||||||| | ||||||||||||||| ||| | ||||||||||    
T  12149469 gaaaatgaattccaaggcgttactttttctagccatgttgttggcttcca 12149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 12146339 - 12146291
Alignment:
Q  54 aaaatgaattccaaagggttactttttctagctatgctcttggcttcca 102  Q
    |||||||||||||| |  |||||||||||||||||| | ||||||||||    
T  12146339 aaaatgaattccaaggctttactttttctagctatgttgttggcttcca 12146291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University