View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-34 (Length: 98)
Name: NF4017-Insertion-34
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-34 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 7e-43; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-43
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 40277163 - 40277072
Alignment:
| Q |
7 |
aaaacacataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttctcattcagtcttatta |
98 |
Q |
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| T |
40277163 |
aaaacacataatatttccattagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttctcattcagtcttatta |
40277072 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 40598425 - 40598499
Alignment:
| Q |
7 |
aaaacacataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacattt |
81 |
Q |
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| T |
40598425 |
aaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattt |
40598499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 40333261 - 40333196
Alignment:
| Q |
18 |
tatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttct |
83 |
Q |
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| T |
40333261 |
tatttcctaaagagaagtgttctaaacttggaattgtagttgaaaatggatcaaaattacatttct |
40333196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 40386539 - 40386474
Alignment:
| Q |
18 |
tatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttct |
83 |
Q |
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| T |
40386539 |
tatttcctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttct |
40386474 |
T |
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