View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-36 (Length: 64)

Name: NF4017-Insertion-36
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-36
NF4017-Insertion-36
[»] chr2 (5 HSPs)
chr2 (8-64)||(21434712-21434768)
chr2 (8-54)||(27153465-27153511)
chr2 (16-64)||(26990553-26990601)
chr2 (16-64)||(27074331-27074379)
chr2 (16-64)||(27029435-27029483)
[»] chr6 (1 HSPs)
chr6 (16-64)||(34692810-34692858)


Alignment Details
Target: chr2 (Bit Score: 53; Significance: 3e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 21434712 - 21434768
Alignment:
Q  8 ataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtagg 64  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21434712 ataaaatgtttgttgtatttgacatattgctaaaactgtatggtggggttttgtagg 21434768  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 27153465 - 27153511
Alignment:
Q  8 ataaaatgtttgttgtatttgatatattgctaaaactgtatggtggg 54  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||    
T  27153465 ataaaaagtctgttgtatttgatatattgctaaaactgtgtggtggg 27153511  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 26990553 - 26990601
Alignment:
Q  16 tttgttgtatttgatatattgctaaaactgtatggtggggttttgtagg 64  Q
    ||||||||||||||||| ||||||||||||| | |||||| ||||||||    
T  26990553 tttgttgtatttgatatgttgctaaaactgtgttgtggggatttgtagg 26990601  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 27074379 - 27074331
Alignment:
Q  16 tttgttgtatttgatatattgctaaaactgtatggtggggttttgtagg 64  Q
    ||||||||||||||||| ||||||||||||| | |||||| ||||||||    
T  27074379 tttgttgtatttgatatgttgctaaaactgtgttgtggggatttgtagg 27074331  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 27029435 - 27029483
Alignment:
Q  16 tttgttgtatttgatatattgctaaaactgtatggtggggttttgtagg 64  Q
    ||||||||||||||||| ||||||||||||| | |||||  ||||||||    
T  27029435 tttgttgtatttgatatgttgctaaaactgtgtagtgggaatttgtagg 27029483  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 34692810 - 34692858
Alignment:
Q  16 tttgttgtatttgatatattgctaaaactgtatggtggggttttgtagg 64  Q
    ||||||||||||||||| ||||||||||||| | |||||| ||||||||    
T  34692810 tttgttgtatttgatatgttgctaaaactgtgttgtggggatttgtagg 34692858  T

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