View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-5 (Length: 811)
Name: NF4017-Insertion-5
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 811
Target Start/End: Original strand, 34816317 - 34817112
Alignment:
| Q |
8 |
gttggaagtagttatcttcattcaagaattgtcctctaactcttataaaatccggaaaaatctatattctattaacatcatctaagagatcgagcaacat |
107 |
Q |
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| T |
34816317 |
gttggaagtagttatcttcattcaagaattgtcctctaactcttataaaatccggaaaaatctatattctattaacatcatctaagagatcgagcaacat |
34816416 |
T |
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| Q |
108 |
atatattgggatgttttggatcaccaattgctgtccaaattaaacaacatatatttacgctgggaatatcctctatcagggttgcaccttagtttgcatg |
207 |
Q |
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| T |
34816417 |
atatattgggatgttttggatcaccaattgctgtccaaattaaacaacatatatttacgctgggaatatcctctatcagggttgcaccttagtttgcatg |
34816516 |
T |
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| Q |
208 |
ttcttttagttgcatccgtagtacatgtttatgtggtttttgtttcattattgttcttgtctgtgagcttcttccactagtttgtaactagaataatatt |
307 |
Q |
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| T |
34816517 |
ttcttttagttgcatccgtagtacatgtttatgtggtttttgtttcattattgttcttgtctgtgagcttcttccactggtttgtaactagaataata-t |
34816615 |
T |
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| Q |
308 |
aaaatcgactgttacgagtatcttcaatgtaatatataaacacacatatcatcacatgactcttatatgcctgtgtcattaaaaaagtcatacgnnnnnn |
407 |
Q |
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| T |
34816616 |
aaaatcgactgttacgagtatcttcaatgtattatataaacacacatatcattacatgactcttatatgactgtgtcattaaaaaagtcatacgtttttt |
34816715 |
T |
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| Q |
408 |
naatgaaaacaatgcatgaattaagtgattctgaaag-nnnnnnnnnnnnnnnntgcaatacattacnnnnnnnnacgggctacaaacaatacatcttct |
506 |
Q |
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| T |
34816716 |
taatgaaaacaatgcatgaattaagtgattctgaaagagaaaaaaaattaaaagtgcaatacattacttttttttacgggctacaaacaatacactttct |
34816815 |
T |
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| Q |
507 |
cctttatttaattgcaaatataatattttgtc-cnnnnnnnnngtacacatttggggttaatgtagccgactcttggctaaatgaggtgtctttggttat |
605 |
Q |
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| T |
34816816 |
cctttatttaattgcaaatataatattttgtcaaaaaagaaaagtacacatttggggttaatgtagccgactcttggctaaatgaggcgtctttggttat |
34816915 |
T |
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| Q |
606 |
taattataaaattgggtgtcttctcttcttatatatggggttgtctattggtggagattcgtgaaagatgaatttgttgtttcatttgattgatcgtatt |
705 |
Q |
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| T |
34816916 |
taattataaaattgggtgtcttctcttcttatacatggggttgtctattggtggagattcgtgaaagatgaatttgttgtttcatt--attgatcgtatt |
34817013 |
T |
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| Q |
706 |
aaaagtaggttgtcgggttgaaagagttgtaacctttcttcgagtgatcttctgatactcctgaagtctgatttgtcctcttttccttcttcaaagctcc |
805 |
Q |
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| T |
34817014 |
aaaagtaggt-------taggaagagtcgtaacctttcttcgagggatcttctgatactcctgaggtctgatttgtcatcttttccttcttcaaagctcc |
34817106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 599 - 718
Target Start/End: Original strand, 42274063 - 42274182
Alignment:
| Q |
599 |
tggttattaattataaaattgggtgtcttctcttcttatatatggggttgtctattggtggagattcgtgaaagatgaatttgttgtttcatttgattga |
698 |
Q |
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| T |
42274063 |
tggttatgaattgtaaaattggttgtttggccttcttatatttggggttatctattgatggaaattcgtgtgagctggattttttgtttcaattgattga |
42274162 |
T |
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| Q |
699 |
tcgtattaaaagtaggttgt |
718 |
Q |
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| T |
42274163 |
ttgtattaaaagtaggttgt |
42274182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 614 - 725
Target Start/End: Original strand, 35417702 - 35417812
Alignment:
| Q |
614 |
aaattgggtgtcttctcttcttatatatggggttgtctattggtggagattcgtgaaagatgaatttgttgtttcatttgattgatcgtattaaaagtag |
713 |
Q |
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| T |
35417702 |
aaattgggtgtcttc-ctttttatatttggggtcgtctattggtggtgattcgcgtaagctgaatttctggtatcctttggttgatcgtattgaaaatag |
35417800 |
T |
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| Q |
714 |
gttgtcgggttg |
725 |
Q |
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| T |
35417801 |
gttgtcaggttg |
35417812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 722
Target Start/End: Complemental strand, 24604879 - 24604833
Alignment:
| Q |
676 |
aatttgttgtttcatttgattgatcgtattaaaagtaggttgtcggg |
722 |
Q |
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| T |
24604879 |
aattttttgtatcatctgattgatcgtattaaaagaaggttgtcggg |
24604833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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